Gene omics information

Query gene ID	Contig23686_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	87.1	Contig23686_at	Contig23686	-	-	4e+0	At2g10014	unknown protein	S.X.	H.G.	Please select
0.55	72.0	Contig21692_at	Contig21692	-	-	3e+0	At2g35970	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	S.X.	H.G.	Please select
0.55	72.0	Contig8795_at	Contig8795	-	-	6e-1	At2g26500	cytochrome b6f complex subunit (petM), putative	S.X.	H.G.	Please select
0.50	66.9	Contig11926_s_at	Contig11926	-	-	2e+0	At4g18270	ATTRANS11	S.X.	H.G.	Please select
0.50	66.9	Contig8833_at	Contig8833	-	-	2e+0	At1g63855	unknown protein	S.X.	H.G.	Please select
0.29	35.5	HU11L10u_s_at	HU11L10u	-	-	2e+0	At1g59865	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
55.0	100.0	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
23.3	99.8	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
18.5	99.7	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
14.1	99.5	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
12.0	99.3	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
11.9	99.3	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
10.1	99.1	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
9.8	99.1	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
9.5	99.0	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
9.3	99.0	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e-1	34	Contig26501_at	Contig26501	-	-	3e-1	At1g51000	unknown protein	C.G.	S.X.	Please select
0.01	5e-1	34	Contig6067_at	Contig6067	-	-	2e-14	At2g43020	ATPAO2 (Polyamine oxidase 2)	C.G.	S.X.	Please select
0.01	2e+0	32	Contig11473_at	Contig11473	-	-	2e-27	At1g03000	PEX6 (PEROXIN 6)	C.G.	S.X.	Please select
0.04	2e+0	32	HY02J04u_at	HY02J04u	-	-	1e+0	At3g22425	IGPD	C.G.	S.X.	Please select
0.03	2e+0	32	Contig26569_at	Contig26569	-	-	2e-5	At5g53045	-	C.G.	S.X.	Please select
0.02	8e+0	30	Contig4066_at	Contig4066	-	-	1e-4	At4g17670	senescence-associated protein-related	C.G.	S.X.	Please select
0.02	8e+0	30	Contig5933_at	Contig5933	-	-	2e-6	At5g35620	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)	C.G.	S.X.	Please select
0.03	8e+0	30	AF052395_at	AF052395	-	-	1e+0	At5g56600	PRF3 (PROFILIN 3)	C.G.	S.X.	Please select
0.03	8e+0	30	Contig15989_at	Contig15989	-	-	2e-1	At1g68300	universal stress protein (USP) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	4e+0	32	Arabidopsis thaliana	At2g10014	6240303	unknown protein	F:unknown;P:unknown;C:unknown	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	6e+0	32	Glycine max	HgAffx.15110.1.S1_at	CB378826	-	-	4e+0	At5g42750	BKI1 (BRI1 kinase inhibitor 1)	C.G.	S.X.	Please select
0.03	8e+0	32	Oryza sativa	Os.9837.1.S1_s_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	6e+0	32	Populus trichocarpa	PtpAffx.2990.1.A1_at	CV266991	chromatin remodeling complex subunit /// chromatin remodeling complex subunit	-	2e+0	At3g47341	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	4e+0	32	Triticum aestivum	TaAffx.39377.1.A1_at	BG907838	-	-	7e+0	At5g50480	NF-YC6 (NUCLEAR FACTOR Y, SUBUNIT C6)	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1607911_at	BQ794094	hypothetical protein LOC100243725	-	3e-38	At1g75330	OTC (ORNITHINE CARBAMOYLTRANSFERASE)	C.G.	S.X.	Please select
0.04	2e+0	32	Zea mays	ZmAffx.355.1.A1_at	AI670542	-	-	3e+0	At1g77890	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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