Gene omics information

Query gene ID	Contig23530_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig23530_s_at	Contig23530	-	-	8e+0	At3g57072	unknown protein	S.X.	H.G.	Please select
0.83	94.0	Contig20949_at	Contig20949	-	-	2e+0	At4g34150	C2 domain-containing protein	S.X.	H.G.	Please select
0.77	90.8	Contig10241_at	Contig10241	-	-	2e-9	At1g29120	unknown protein	S.X.	H.G.	Please select
0.67	84.7	HM01F24T_s_at	HM01F24T	-	-	4e-5	At2g33370	60S ribosomal protein L23 (RPL23B)	S.X.	H.G.	Please select
0.67	84.7	HY09M22u_s_at	HY09M22u	-	-	3e+0	At2g04378	beta-galactosidase	S.X.	H.G.	Please select
0.59	75.8	Contig14763_at	Contig14763	-	-	2e-1	At2g37510	RNA-binding protein, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.0	99.1	GSM419977	Palea_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
10.0	99.1	GSM440965	Control palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
9.6	99.0	GSM146368	Maythorpe Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
8.9	98.9	GSM146362	Golden Promise Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
8.8	98.9	GSM146359	Golden Promise Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
8.1	98.7	GSM419975	Palea_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
8.1	98.7	GSM440963	Control palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
8.0	98.7	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.3	98.5	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.7	98.3	GSM146366	Maythorpe Root Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-2	38	Contig12040_at	Contig12040	-	-	2e-1	At4g29570	cytidine deaminase, putative / cytidine aminohydrolase, putative	C.G.	S.X.	Please select
0.03	6e-2	36	Contig15391_at	Contig15391	-	-	2e-9	At2g42280	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select
0.05	2e-1	34	EBpi07_SQ002_O14_at	EBpi07_SQ002_O14	-	-	3e+0	At2g26520	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	34	Contig3023_s_at	Contig3023	-	-	2e-1	At3g49850	TRB3 (TELOMERE REPEAT BINDING FACTOR 3)	C.G.	S.X.	Please select
0.04	2e-1	34	Contig21196_at	Contig21196	-	-	5e+0	At4g26030	transcription factor	C.G.	S.X.	Please select
0.01	1e+0	32	Contig8430_at	Contig8430	-	-	6e-5	At5g01290	mRNA guanylyltransferase/ phosphatase/ polynucleotide 5'-phosphatase/ protein tyrosine phosphatase/ protein tyrosine/serine/threonine phosphatase	C.G.	S.X.	Please select
0.02	1e+0	32	Contig6056_s_at	Contig6056	-	-	7e-19	At3g13670	protein kinase family protein	C.G.	S.X.	Please select
0.02	1e+0	32	Contig11767_at	Contig11767	-	-	1e-1	At4g14620	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	32	Contig10346_at	Contig10346	-	-	8e-1	At2g22080	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	8e+0	30	Arabidopsis thaliana	At3g57072	6240700	unknown protein	F:unknown;P:unknown;C:unknown	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	7e-1	34	Glycine max	Gma.5228.1.S1_at	CD394907	-	-	1e+0	At5g43970	TOM22-V (TRANSLOCASE OF OUTER MEMBRANE 22-V)	C.G.	S.X.	Please select
0.05	4e-3	42	Oryza sativa	OsAffx.3635.1.S1_s_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	2e-1	36	Populus trichocarpa	PtpAffx.95130.1.A1_s_at	CV258918	hypothetical protein	-	8e-1	At1g30300	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.31	2e-13	75	Triticum aestivum	Ta.13150.1.A1_at	BQ294879	-	-	3e-1	At4g14560	IAA1 (INDOLE-3-ACETIC ACID INDUCIBLE)	C.G.	S.X.	Please select
0.05	6e-1	32	Vitis vinifera	1617342_at	CF605608	hypothetical protein LOC100250363	-	2e-8	At4g27000	ATRBP45C	C.G.	S.X.	Please select
0.04	9e-1	32	Zea mays	Zm.14320.1.S1_at	BQ619478	hypothetical protein LOC100277165	-	1e-1	At1g65484	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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