CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig23462_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.70 86.0 Contig23462_at Contig23462 - - 5e+0 At5g43770 proline-rich family protein S.X. H.G.
0.63 80.3 Contig7584_at Contig7584 - - 2e+0 At1g23660 unknown protein S.X. H.G.
0.52 68.3 Contig7322_at Contig7322 - - 2e-3 At3g27310 PUX1 (PLANT UBX DOMAIN-CONTAINING PROTEIN 1) S.X. H.G.
0.49 63.7 Contig11131_s_at Contig11131 - - 6e-25 At2g45500 ATP binding / nucleoside-triphosphatase/ nucleotide binding S.X. H.G.
0.48 63.2 Contig16048_at Contig16048 - - 8e-1 At1g24880 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase S.X. H.G.
0.47 62.2 Contig5226_at Contig5226 - - 1e-1 At1g79790 haloacid dehalogenase-like hydrolase family protein S.X. H.G.
0.43 56.4 HU02E04u_s_at HU02E04u - - 8e-5 At3g27720 zinc finger protein-related S.X. H.G.
0.43 56.4 Contig16867_at Contig16867 - - 7e-9 At3g02690 integral membrane family protein S.X. H.G.
0.39 50.5 Contig8299_at Contig8299 - - 3e-9 At3g20650 mRNA capping enzyme family protein S.X. H.G.
0.37 47.9 Contig8279_at Contig8279 - - 7e-18 At3g23990 HSP60 (HEAT SHOCK PROTEIN 60) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
58.9 100.0 GSM382234 Root_Hg3 GSE15295 Mercury toxicity in barley roots
41.3 99.9 GSM382233 Root_Hg2 GSE15295 Mercury toxicity in barley roots
14.2 99.5 GSM419973 Lemma_Rep2 GSE16754 Comparative transcriptional profiling of organs of the barley spike
14.2 99.5 GSM440958 Control lemma_Rep2 GSE17669 Gene expression in the barley spike during drought stress
11.8 99.3 GSM419974 Lemma_Rep3 GSE16754 Comparative transcriptional profiling of organs of the barley spike
11.8 99.3 GSM440959 Control lemma_Rep3 GSE17669 Gene expression in the barley spike during drought stress
11.4 99.3 GSM419979 Awn_Rep2 GSE16754 Comparative transcriptional profiling of organs of the barley spike
11.4 99.3 GSM440970 Control awn_Rep2 GSE17669 Gene expression in the barley spike during drought stress
10.5 99.2 GSM382232 Root_Hg1 GSE15295 Mercury toxicity in barley roots
10.0 99.1 GSM419977 Palea_Rep3 GSE16754 Comparative transcriptional profiling of organs of the barley spike
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 7e-1 32 Contig26180_at Contig26180 - - 4e+0 At5g05690 CPD (CONSTITUTIVE PHOTOMORPHOGENIC DWARF) C.G. S.X.
0.08 7e-1 32 Contig10283_x_at Contig10283 - - 6e+0 At5g06310 AtPOT1b (protection of telomeres 1b) C.G. S.X.
0.08 7e-1 32 Contig10283_at Contig10283 - - 6e+0 At5g06310 AtPOT1b (protection of telomeres 1b) C.G. S.X.
0.01 3e+0 30 Contig10720_at Contig10720 - - 1e-39 At1g22620 ATSAC1 (suppressor of actin 1) C.G. S.X.
0.05 3e+0 30 HW08K02u_at HW08K02u - - 2e-1 At5g02650 unknown protein C.G. S.X.
0.01 3e+0 30 Contig12838_at Contig12838 - - 4e-3 At5g18070 DRT101 (DNA-DAMAGE-REPAIR/TOLERATION 101) C.G. S.X.
0.03 3e+0 30 Contig2812_at Contig2812 gibberellic acid (GA3) inducible - 6e+0 At4g24340 phosphorylase family protein C.G. S.X.
0.02 1e+1 28 Contig20253_at Contig20253 - - 3e-2 At1g47670 amino acid transporter family protein C.G. S.X.
0.05 1e+1 28 HVSMEn0022J09r2_at HVSMEn0022J09r2 - - 2e-1 At3g55070 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 5e+0 30 Arabidopsis thaliana At5g43770 834399 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MBPOFVA - - - C.G. S.X.
0.06 2e+0 32 Glycine max HgAffx.13651.1.S1_at CB374331 - - 1e+1 At5g37610 voltage-gated anion channel C.G. S.X.
0.04 1e+1 30 Oryza sativa OsAffx.23728.1.S1_at - - - 0 C.G. S.X.
0.05 8e+0 30 Populus trichocarpa PtpAffx.217123.1.S1_s_at pmrna32266 hypothetical protein - 2e-1 At5g49120 senescence-associated protein-related C.G. S.X.
0.20 5e-25 113 Triticum aestivum Ta.29563.1.S1_at CA729856 - - 9e-1 At1g68280 thioesterase-related C.G. S.X.
0.06 2e+0 30 Vitis vinifera 1619520_at CB008493 - - 1e-1 At5g15460 MUB2 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 2) C.G. S.X.
0.06 4e-2 36 Zea mays Zm.12977.2.S1_at AI677017 Hypothetical protein LOC100193319 - 5e-5 At1g15370 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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