Gene omics information

Query gene ID	Contig23458_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.74	89.1	Contig23458_at	Contig23458	-	-	5e+0	At5g48950	thioesterase family protein	S.X.	H.G.	Please select
0.90	95.7	HVSMEm0004M18r2_at	HVSMEm0004M18r2	-	-	2e+0	At3g09970	calcineurin-like phosphoesterase family protein	S.X.	H.G.	Please select
0.70	86.0	HA06j10r_at	HA06j10r	-	-	2e+0	At4g21920	unknown protein	S.X.	H.G.	Please select
0.70	86.0	Contig21533_at	Contig21533	-	-	2e+0	At1g24000	Bet v I allergen family protein	S.X.	H.G.	Please select
0.68	85.1	9507414_R_4264-4644_at	9507414_R_4264-4644	-	-	1e+1	At5g06320	NHL3	S.X.	H.G.	Please select
0.63	80.3	HW03P01u_at	HW03P01u	-	-	1e+1	At5g13190	-	S.X.	H.G.	Please select
0.63	80.3	HS05N06r_at	HS05N06r	-	-	9e-1	At1g79110	protein binding / zinc ion binding	S.X.	H.G.	Please select
0.62	79.1	EBro08_SQ001_H04_at	EBro08_SQ001_H04	-	-	1e+1	At5g23027	unknown protein	S.X.	H.G.	Please select
0.61	78.7	HY02C19u_at	HY02C19u	-	-	5e+0	At4g15610	integral membrane family protein	S.X.	H.G.	Please select
0.61	78.7	Contig17900_at	Contig17900	-	-	6e+0	At4g05170	DNA binding / transcription factor	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.3	98.8	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
7.5	98.6	GSM261041	Dicktoo-deacclimation-rep3	GSE10329	Low temperature stress in cv. Dicktoo
5.6	97.7	GSM419973	Lemma_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
5.6	97.7	GSM440958	Control lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
5.4	97.5	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
5.0	97.2	GSM71154	Morex stress and unstress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
5.0	97.2	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
5.0	97.2	GSM71156	Morex stress and unstress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
4.7	96.9	GSM261040	Dicktoo-deacclimation-rep2	GSE10329	Low temperature stress in cv. Dicktoo
4.6	96.8	GSM419975	Palea_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	6e-1	34	HA07k01r_at	HA07k01r	-	-	1e+0	At3g48640	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	HX09G24r_at	HX09G24r	-	-	3e+0	At3g02555	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Contig15585_at	Contig15585	-	-	6e-97	At1g79050	DNA repair protein recA	C.G.	S.X.	Please select
0.02	2e+0	32	Contig12137_s_at	Contig12137	-	-	3e-2	At5g66990	RWP-RK domain-containing protein	C.G.	S.X.	Please select
0.02	2e+0	32	Contig12137_at	Contig12137	-	-	3e-2	At5g66990	RWP-RK domain-containing protein	C.G.	S.X.	Please select
0.02	2e+0	32	Contig11332_at	Contig11332	-	-	4e-1	At3g43790	ZIFL2 (ZINC INDUCED FACILITATOR-like 2)	C.G.	S.X.	Please select
0.02	2e+0	32	Contig8957_at	Contig8957	-	-	1e-41	At1g09150	pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein	C.G.	S.X.	Please select
0.02	9e+0	30	Contig8240_s_at	Contig8240	-	-	5e+0	At4g12825	-	C.G.	S.X.	Please select
0.02	9e+0	30	Contig8240_at	Contig8240	-	-	5e+0	At4g12825	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e+0	32	Arabidopsis thaliana	At5g48950	834953	thioesterase family protein	F:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:cellular_component unknown;BOP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	Gma.12963.1.A1_at	CD397641	-	-	2e-4	At4g28130	diacylglycerol kinase accessory domain-containing protein	C.G.	S.X.	Please select
0.08	2e-1	38	Oryza sativa	Os02g0813300	AK060823.1	-	Cyclin-like F-box domain containing protein	6e-1	At4g15150	glycine-rich protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+0	34	Populus trichocarpa	PtpAffx.204270.1.S1_at	pmrna8402	SAUR family protein	-	4e-4	At4g34800	auxin-responsive family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	5e+0	32	Triticum aestivum	Ta.4911.3.S1_a_at	CA593346	-	-	2e-1	Atmg00840	-	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1618113_at	CF206147.1	-	-	3e+0	At2g43018	CPuORF17 (Conserved peptide upstream open reading frame 17)	C.G.	S.X.	Please select
0.05	8e+0	30	Zea mays	ZmAffx.1094.1.S1_at	AW076179	hypothetical protein LOC100277126	-	2e-5	At2g43018	CPuORF17 (Conserved peptide upstream open reading frame 17)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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