Gene omics information

Query gene ID	Contig2343_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	90.8	Contig2343_s_at	Contig2343	-	-	1e+0	At5g26010	catalytic/ protein serine/threonine phosphatase	S.X.	H.G.	Please select
0.60	77.3	Contig11477_at	Contig11477	-	-	8e-5	At1g79040	PSBR (photosystem II subunit R)	S.X.	H.G.	Please select
0.50	66.9	Contig10661_at	Contig10661	-	-	2e+0	At3g15680	zinc finger (Ran-binding) family protein	S.X.	H.G.	Please select
0.50	66.9	Contig7360_at	Contig7360	-	-	3e+0	At4g19620	unknown protein	S.X.	H.G.	Please select
0.44	58.9	Contig19949_at	Contig19949	-	-	7e+0	At3g02620	acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative	S.X.	H.G.	Please select
0.39	50.5	Contig1512_at	Contig1512	-	-	0	At5g12250	TUB6 (BETA-6 TUBULIN)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.7	97.7	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.4	97.5	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.8	97.0	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.6	96.8	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.6	96.8	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
4.0	96.0	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.9	95.8	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.8	95.7	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.4	94.8	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e-2	40	Contig2155_at	Contig2155	-	-	3e-9	At2g20890	PSB29	C.G.	S.X.	Please select
0.01	6e-1	34	Contig944_at	Contig944	-	-	1e-18	At1g29910	CAB3 (CHLOROPHYLL A/B BINDING PROTEIN 3)	C.G.	S.X.	Please select
0.02	3e+0	32	Contig10057_at	Contig10057	-	-	8e-6	At2g23580	MES4 (METHYL ESTERASE 4)	C.G.	S.X.	Please select
0.02	3e+0	32	Contig19325_at	Contig19325	-	-	9e-2	At1g68795	CLE12 (CLAVATA3/ESR-RELATED 12)	C.G.	S.X.	Please select
0.02	3e+0	32	Contig11374_at	Contig11374	-	-	2e-5	At2g17530	protein kinase family protein	C.G.	S.X.	Please select
0.02	3e+0	32	Contig10057_s_at	Contig10057	-	-	8e-6	At2g23580	MES4 (METHYL ESTERASE 4)	C.G.	S.X.	Please select
0.01	1e+1	30	Contig9099_at	Contig9099	-	-	3e-3	At4g26080	ABI1 (ABA INSENSITIVE 1)	C.G.	S.X.	Please select
0.01	1e+1	30	Contig8201_at	Contig8201	-	-	7e-1	At5g59310	LTP4 (LIPID TRANSFER PROTEIN 4)	C.G.	S.X.	Please select
0.03	1e+1	30	Contig17317_at	Contig17317	-	-	4e+0	At4g15030	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e+0	34	Arabidopsis thaliana	At5g26010	832670	catalytic/ protein serine/threonine phosphatase	F:protein serine/threonine phosphatase activity, catalytic activity;P:N-terminal protein myristoylation;C:cellular_component unknown;PMOFBV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.13	5e-1	36	Glycine max	GmaAffx.85246.1.S1_at	BI968969	-	-	4e-10	At5g14250	COP13 (CONSTITUTIVE PHOTOMORPHOGENIC 13)	C.G.	S.X.	Please select
0.32	5e-131	468	Oryza sativa	Os.33735.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.28	1e-7	57	Populus trichocarpa	PtpAffx.31198.1.S1_at	CV243798	hypothetical protein	-	3e-11	At5g14250	COP13 (CONSTITUTIVE PHOTOMORPHOGENIC 13)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.46	0	1025	Triticum aestivum	Ta.2898.1.S1_at	CK200849	-	-	4e+0	At5g26010	catalytic/ protein serine/threonine phosphatase	C.G.	S.X.	Please select
0.17	4e-7	54	Vitis vinifera	1615443_at	CF211454	hypothetical protein LOC100266172	-	6e-2	At5g14250	COP13 (CONSTITUTIVE PHOTOMORPHOGENIC 13)	C.G.	S.X.	Please select
0.50	1e-88	325	Zea mays	Zm.5609.1.A1_at	CF632012	COP9 signalosome complex subunit 3	-	1e-1	At1g20816	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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