CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig23437_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.94 98.9 Contig23437_at Contig23437 - - 2e+0 At5g66870 ASL1 S.X. H.G.
0.28 35.5 HT06B11r_at HT06B11r - - 3e-1 At3g48344 unknown protein S.X. H.G.
0.25 28.9 HX09K05r_at HX09K05r - - 4e+0 At2g20080 unknown protein S.X. H.G.
0.25 28.9 EBca01_SQ004_P03_x_at EBca01_SQ004_P03 - - 2e+0 At1g06960 small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative S.X. H.G.
0.22 24.2 EBca01_SQ004_P03_at EBca01_SQ004_P03 - - 2e+0 At1g06960 small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative S.X. H.G.
0.20 21.1 HA30O17r_at HA30O17r - - 9e-10 At4g33865 40S ribosomal protein S29 (RPS29C) S.X. H.G.
0.19 19.6 HM11C20r_at HM11C20r - - 4e+0 At3g55890 yippee family protein S.X. H.G.
0.17 16.9 HT08O05u_at HT08O05u - - 7e-1 At5g25450 ubiquinol-cytochrome C reductase complex 14 kDa protein, putative S.X. H.G.
0.12 10.4 HC113H04_SK_at HC113H04_SK - - 3e+0 At2g42410 ZFP11 (ZINC FINGER PROTEIN 11) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
11.8 99.3 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
8.9 98.9 GSM282026 Malting_day1_Legacy_rep4 GSE11200 Expression data from malting barley seeds
8.9 98.9 GSM146373 Golden Promise shoot Salt, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
8.7 98.9 GSM238435 Embryo 24 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
8.3 98.8 GSM146379 Maythorpe shoot Salt, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.6 98.2 GSM238430 Embryo 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
6.1 98.0 GSM238429 Embryo 16DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
5.7 97.7 GSM213441 Barley seeds control in Hoagland solution for 12hr GSE8618 P. aeruginosa virulent factor to barley
5.7 97.7 GSM282037 Malting_day1_Morex_rep2 GSE11200 Expression data from malting barley seeds
5.7 97.7 GSM440962 Stressed lemma_Rep3 GSE17669 Gene expression in the barley spike during drought stress
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 8e-1 34 rbaal1n19_at rbaal1n19 - - 2e-8 At1g79850 RPS17 (RIBOSOMAL PROTEIN S17) C.G. S.X.
0.02 8e-1 34 rbags24c10_at rbags24c10 - - 1e+0 At3g12880 invertase/pectin methylesterase inhibitor family protein C.G. S.X.
0.02 3e+0 32 EBpi01_SQ004_J13_at EBpi01_SQ004_J13 - - 5e+0 At5g66658 unknown protein C.G. S.X.
0.02 3e+0 32 Contig4490_s_at Contig4490 - - 4e-10 At1g79850 RPS17 (RIBOSOMAL PROTEIN S17) C.G. S.X.
0.01 3e+0 32 Contig6159_at Contig6159 - - 2e-2 At4g30980 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.02 3e+0 32 HV08J24u_at HV08J24u - - 1e+0 At2g35605 SWIB complex BAF60b domain-containing protein C.G. S.X.
0.02 3e+0 32 HV08J24u_x_at HV08J24u - - 1e+0 At2g35605 SWIB complex BAF60b domain-containing protein C.G. S.X.
0.02 3e+0 32 HV08J24u_s_at HV08J24u - - 1e+0 At2g35605 SWIB complex BAF60b domain-containing protein C.G. S.X.
0.01 3e+0 32 Contig5866_at Contig5866 - - 3e-63 At3g12670 emb2742 (embryo defective 2742) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e+0 34 Arabidopsis thaliana At5g66870 836821 ASL1 Encodes LOB domain protein whose overexpression results in KNOX gene repression. Overexpression also results in plants with hyponastic leaves, downward pointing flowers and reduced apical dominance. May be involved in the transcriptional regulation of the homeobox gene BP (brevipedicellus) during lateral organ differentiation. Acts together with AS2 in proximal-distal symmetry determination. - - - C.G. S.X.
0.03 2e+0 34 Glycine max GmaAffx.17466.1.A1_at BE821153 - - 3e+0 At3g11591 unknown protein C.G. S.X.
0.25 1e-55 218 Oryza sativa Os05g0219800 AK102822.1 - DEAH helicase isoform 6 1e-4 At1g79890 helicase-related C.G. S.X.
0.05 4e-5 50 Populus trichocarpa PtpAffx.200616.1.S1_at pmrna1205 hypothetical protein - 2e-55 At1g79890 helicase-related C.G. S.X.
0.22 8e-21 101 Triticum aestivum TaAffx.30607.1.S1_at CA623679 - - 1e+1 Atmg00120 - C.G. S.X.
0.03 7e+0 30 Vitis vinifera 1622884_at CD719073 - - 3e-1 At5g38080 unknown protein C.G. S.X.
0.02 3e+0 32 Zea mays Zm.9212.1.A1_at BM078565 - - 1e-3 At5g23220 NIC3 (NICOTINAMIDASE 3) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage