CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig23389_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.53 69.7 Contig23389_at Contig23389 - - 2e-2 At2g22370 unknown protein S.X. H.G.
0.42 55.2 Contig7556_s_at Contig7556 - - 5e-1 At1g21326 VQ motif-containing protein S.X. H.G.
0.40 53.1 Contig12867_at Contig12867 - - 9e-41 At1g34430 EMB3003 (embryo defective 3003) S.X. H.G.
0.35 45.1 HA03M05u_s_at HA03M05u - - 2e-7 At3g20390 endoribonuclease L-PSP family protein S.X. H.G.
0.30 37.0 Contig4672_at Contig4672 - - 4e-71 At5g10840 endomembrane protein 70, putative S.X. H.G.
0.29 35.5 Contig1302_at Contig1302 - - 1e-5 At1g20580 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative S.X. H.G.
0.21 22.6 Contig1012_s_at Contig1012 - - 2e-43 At2g34420 LHB1B2 S.X. H.G.
0.17 16.9 Contig22848_at Contig22848 - - 3e-1 At3g59640 glycine-rich protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.2 98.7 GSM146368 Maythorpe Root Salt, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.4 97.5 GSM146361 Golden Promise Root Salt, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.1 97.3 GSM146364 Maythorpe Root Control, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.8 97.0 GSM146367 Maythorpe Root Salt, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.7 96.9 GSM146362 Golden Promise Root Salt, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.6 96.8 GSM146359 Golden Promise Root Control, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.5 96.7 GSM146365 Maythorpe Root Control, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.2 96.3 GSM238412 Endosperm 4DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.1 96.2 GSM146358 Golden Promise Root Control, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.7 95.5 GSM238413 Endosperm 4DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 5e-1 34 Contig6221_at Contig6221 - - 2e+0 At1g80245 - C.G. S.X.
0.03 2e+0 32 Contig15497_at Contig15497 - - 7e+0 At5g62576 unknown protein C.G. S.X.
0.02 2e+0 32 Contig8307_s_at Contig8307 - - 4e-4 At5g11940 subtilase family protein C.G. S.X.
0.01 2e+0 32 Contig7707_at Contig7707 - - 1e-18 At3g54250 mevalonate diphosphate decarboxylase, putative C.G. S.X.
0.01 2e+0 32 Contig6654_at Contig6654 - - 2e-30 At2g40840 DPE2 (DISPROPORTIONATING ENZYME 2) C.G. S.X.
0.02 2e+0 32 Contig15018_at Contig15018 - - 2e+0 At4g10920 KELP C.G. S.X.
0.03 2e+0 32 Contig13889_at Contig13889 - - 3e-2 At3g08910 DNAJ heat shock protein, putative C.G. S.X.
0.03 2e+0 32 Contig23393_at Contig23393 - - 3e-1 At1g54410 dehydrin family protein C.G. S.X.
0.01 2e+0 32 Contig4267_at Contig4267 - - 2e-8 At4g00830 RNA recognition motif (RRM)-containing protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 2e-2 40 Arabidopsis thaliana At2g22370 816769 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO - - - C.G. S.X.
0.04 6e+0 32 Glycine max PsAffx.psMC006xD24f_at PsAffx.psMC006xD24f - - 9e+0 At1g55615 unknown protein C.G. S.X.
0.46 1e-97 357 Oryza sativa Os02g0193900 AK069578.1 - Conserved hypothetical protein 2e-10 At2g22370 unknown protein C.G. S.X.
0.05 2e+0 34 Populus trichocarpa PtpAffx.141946.1.S1_s_at CN518150 hypothetical protein - 2e-23 At2g22370 unknown protein C.G. S.X.
0.53 2e-140 498 Triticum aestivum TaAffx.8051.1.S1_at BQ482848 - - 9e-9 At2g22370 unknown protein C.G. S.X.
0.11 5e-6 50 Vitis vinifera 1615066_at BQ792737 hypothetical protein LOC100250557 - 7e-8 At2g22370 unknown protein C.G. S.X.
0.44 4e-75 280 Zea mays Zm.6435.1.A1_at BM078602 hypothetical protein LOC100217154 - 1e-5 At2g22370 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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