CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig23381_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 84.7 Contig23381_at Contig23381 - - 2e+0 At3g05327 - S.X. H.G.
0.60 77.3 Contig7958_at Contig7958 - - 7e-8 At2g02040 PTR2 (PEPTIDE TRANSPORTER 2) S.X. H.G.
0.46 61.0 HVSMEk0007B01r2_s_at HVSMEk0007B01r2 - - 6e+0 At1g12030 unknown protein S.X. H.G.
0.23 26.1 Contig4090_s_at Contig4090 triticain beta 2 - 4e-7 At5g43060 cysteine proteinase, putative / thiol protease, putative S.X. H.G.
0.21 22.6 Contig7830_s_at Contig7830 - - 3e-22 At2g02860 SUT2 (SUCROSE TRANSPORTER 2) S.X. H.G.
0.21 22.6 Contig3882_s_at Contig3882 - - 2e-68 At3g18820 ATRAB7B (ARABIDOPSIS RAB GTPASE HOMOLOG G3F) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
112.9 100.0 GSM238411 Pericarp 8DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
55.6 100.0 GSM238410 Pericarp 8DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
40.3 99.9 GSM238409 Pericarp 4DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
26.1 99.8 GSM238408 Pericarp 4DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
6.9 98.3 GSM238429 Embryo 16DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
5.1 97.3 GSM238415 Endosperm 8DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
4.9 97.1 GSM238413 Endosperm 4DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
4.4 96.6 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.4 96.6 GSM238412 Endosperm 4DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.8 95.7 GSM130806 JA and salinity stress, biological rep2 GSE5605 Expression data from barley under salinity stress and JA treatment
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 6e-11 67 Contig17201_at Contig17201 - - 5e-1 At5g53850 haloacid dehalogenase-like hydrolase family protein C.G. S.X.
0.13 2e-10 65 Contig7911_at Contig7911 - - 2e-4 At4g28400 protein phosphatase 2C, putative / PP2C, putative C.G. S.X.
0.02 8e-1 34 Contig20287_at Contig20287 - - 6e-1 At1g03810 DNA-binding protein-related C.G. S.X.
0.03 3e+0 32 HVSMEh0082A13r2_s_at HVSMEh0082A13r2 - - 3e+0 At1g63120 ATRBL2 (Arabidopsis thaliana Rhomboid-like 2) C.G. S.X.
0.02 3e+0 32 Contig13662_at Contig13662 - - 5e-3 At1g27840 transducin family protein / WD-40 repeat family protein C.G. S.X.
0.01 1e+1 30 Contig9386_at Contig9386 - - 8e-17 At5g05980 ATDFB (A. THALIANA DHFS-FPGS HOMOLOG B) C.G. S.X.
0.02 1e+1 30 Contig701_x_at Contig701 - - 1e-31 At1g09200 histone H3 C.G. S.X.
0.01 1e+1 30 Contig3716_at Contig3716 - - 4e-2 At4g37110 protein binding / zinc ion binding C.G. S.X.
0.02 1e+1 30 Contig15689_at Contig15689 - - 2e+0 At3g26470 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 34 Arabidopsis thaliana At3g05327 3768801 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FOMPB - - - C.G. S.X.
0.03 1e-2 42 Glycine max GmaAffx.70074.1.S1_at BU926626 - - 4e-12 At2g36350 protein kinase, putative C.G. S.X.
0.01 3e+0 34 Oryza sativa Os02g0581500 AK059396.1 - Alpha/beta hydrolase family protein 3e+0 At4g21890 unknown protein C.G. S.X.
0.03 6e-1 36 Populus trichocarpa PtpAffx.225652.1.S1_x_at pmrna45144 tir-nbs-lrr resistance protein /// tir-nbs-lrr resistance protein /// NBS resistance protein /// tir-nbs-lrr resistance protein /// tir-nbs-lrr resistance protein /// nbs-lrr resistance protein /// hypothetical protein /// hypothetical protein /// tir-nbs-lrr resistance protein /// hypothetical protein /// hypothetical protein /// NBS resistance protein /// hypothetical protein /// hypothetical protein - 3e-4 At3g51880 HMGB1 (HIGH MOBILITY GROUP B 1) C.G. S.X.
0.25 4e-29 129 Triticum aestivum Ta.28765.1.A1_at CD452404 - - 9e+0 At5g38960 germin-like protein, putative C.G. S.X.
0.03 5e-1 34 Vitis vinifera 1606871_at CB970216 hypothetical protein LOC100265666 - 1e-3 At4g11090 unknown protein C.G. S.X.
0.02 3e+0 32 Zea mays Zm.18877.1.A1_at CO529651 protein phosphatase 2C - 3e-1 At4g16580 catalytic C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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