Gene omics information

Query gene ID	Contig23267_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig23267_at	Contig23267	-	-	5e+0	At3g03830	auxin-responsive protein, putative	S.X.	H.G.	Please select
0.80	92.5	Contig18641_at	Contig18641	-	-	5e-4	At1g68850	peroxidase, putative	S.X.	H.G.	Please select
0.60	77.3	Contig22190_s_at	Contig22190	-	-	4e-2	At4g27745	-	S.X.	H.G.	Please select
0.50	66.9	S0001100116E08F1_x_at	S0001100116E08F1	-	-	1e+1	At3g29639	-	S.X.	H.G.	Please select
0.38	49.5	Contig17857_at	Contig17857	-	-	4e-5	At3g02600	LPP3 (LIPID PHOSPHATE PHOSPHATASE 3)	S.X.	H.G.	Please select
0.23	26.1	HB25K17r_at	HB25K17r	-	-	2e+0	At4g09260	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
25.5	99.8	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
18.2	99.7	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
12.6	99.4	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.1	98.0	GSM261074	Albina e-16 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.9	97.9	GSM419973	Lemma_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
5.9	97.9	GSM440958	Control lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
5.7	97.7	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.9	97.1	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.6	96.8	GSM419972	Lemma_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.6	96.8	GSM440957	Control lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	4e-36	151	Contig6275_at	Contig6275	-	-	4e-10	At1g14650	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein	C.G.	S.X.	Please select
0.11	1e-32	139	Contig11182_at	Contig11182	-	-	7e-25	At5g36880	acetyl-CoA synthetase, putative / acetate-CoA ligase, putative	C.G.	S.X.	Please select
0.13	5e-29	127	Contig20777_at	Contig20777	-	-	1e-1	At3g47640	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select
0.22	1e-26	119	rbaal22m20_s_at	rbaal22m20	-	-	2e+0	At1g37113	unknown protein	C.G.	S.X.	Please select
0.09	7e-22	103	Contig12349_at	Contig12349	-	-	2e-3	At1g78895	-	C.G.	S.X.	Please select
0.09	1e-17	89	Contig9615_at	Contig9615	-	-	1e+0	At1g35880	-	C.G.	S.X.	Please select
0.13	4e-17	87	Contig7167_at	Contig7167	-	-	1e+0	At5g18020	auxin-responsive protein, putative	C.G.	S.X.	Please select
0.15	3e-15	81	EBro03_SQ003_E09_at	EBro03_SQ003_E09	-	-	3e+0	At2g32645	unknown protein	C.G.	S.X.	Please select
0.09	1e-14	79	Contig7168_s_at	Contig7168	-	-	2e-16	At1g25682	cell cycle control protein-related	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	5e+0	32	Arabidopsis thaliana	At3g03830	821123	auxin-responsive protein, putative	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	7e+0	32	Glycine max	GmaAffx.88296.1.S1_at	CA784295	-	-	9e-1	At5g42030	ABIL4 (ABL INTERACTOR-LIKE PROTEIN 4)	C.G.	S.X.	Please select
0.13	2e-62	240	Oryza sativa	Os08g0496000	AK103187.1	-	Cytochrome oxidase assembly family protein	1e-12	At5g56090	COX15 (cytochrome c oxidase 15)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	6e+0	32	Populus trichocarpa	PtpAffx.41659.1.A1_at	DN493100	-	-	4e+0	At3g56610	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.54	9e-91	333	Triticum aestivum	Ta.5421.1.A1_at	BJ282730	-	-	1e+0	At2g19310	-	C.G.	S.X.	Please select
0.04	5e+0	30	Vitis vinifera	1621963_x_at	CF202638.1	-	-	4e+0	At1g67920	unknown protein	C.G.	S.X.	Please select
0.12	2e-16	85	Zea mays	Zm.13434.1.A1_at	AW562937	hypothetical protein LOC100192499	-	4e-12	At5g56090	COX15 (cytochrome c oxidase 15)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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