Gene omics information

Query gene ID	Contig23219_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig23219_at	Contig23219	-	-	1e-3	At1g62240	unknown protein	S.X.	H.G.	Please select
0.23	26.1	Contig20522_at	Contig20522	-	-	3e-1	At4g38740	ROC1 (ROTAMASE CYP 1)	S.X.	H.G.	Please select
0.13	11.6	Contig8013_at	Contig8013	-	-	4e-12	At1g54390	PHD finger protein-related	S.X.	H.G.	Please select
0.11	9.4	HV05G21u_x_at	HV05G21u	-	-	1e+1	At5g12110	elongation factor 1B alpha-subunit 1 (eEF1Balpha1)	S.X.	H.G.	Please select
0.07	5.8	Contig25667_x_at	Contig25667	-	-	7e-1	At1g24000	Bet v I allergen family protein	S.X.	H.G.	Please select
0.03	2.6	HY02C19u_at	HY02C19u	-	-	5e+0	At4g15610	integral membrane family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
51.1	99.9	GSM146365	Maythorpe Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
49.7	99.9	GSM146357	Golden Promise Root Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
47.5	99.9	GSM146359	Golden Promise Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
45.5	99.9	GSM146360	Golden Promise Root Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
39.4	99.9	GSM146363	Maythorpe Root Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
38.1	99.9	GSM146366	Maythorpe Root Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
24.5	99.8	GSM146358	Golden Promise Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
22.1	99.8	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
16.9	99.6	GSM146364	Maythorpe Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
16.0	99.6	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e-2	40	Contig19309_at	Contig19309	-	-	1e+0	At5g59290	UXS3 (UDP-GLUCURONIC ACID DECARBOXYLASE 3)	C.G.	S.X.	Please select
0.06	1e-2	40	Contig6390_at	Contig6390	-	-	2e-3	At1g62240	unknown protein	C.G.	S.X.	Please select
0.07	1e-2	40	Contig13783_at	Contig13783	-	-	4e-1	At2g41225	unknown protein	C.G.	S.X.	Please select
0.03	4e-2	38	Contig7936_at	Contig7936	-	-	1e-14	At4g38320	HHP5 (heptahelical protein 5)	C.G.	S.X.	Please select
0.02	4e-2	38	Contig4944_s_at	Contig4944	-	-	3e+0	At5g14360	ubiquitin family protein	C.G.	S.X.	Please select
0.03	4e-2	38	Contig7939_at	Contig7939	-	-	2e-34	At4g25550	protein binding	C.G.	S.X.	Please select
0.04	4e-2	38	Contig17523_at	Contig17523	-	-	7e-2	At4g08230	glycine-rich protein	C.G.	S.X.	Please select
0.03	4e-2	38	Contig19691_at	Contig19691	-	-	1e-4	At1g30475	-	C.G.	S.X.	Please select
0.03	4e-2	38	Contig7507_at	Contig7507	-	-	4e-1	At5g19810	proline-rich extensin-like family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	1e-3	44	Arabidopsis thaliana	At1g62240	842521	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBOPFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	2e-3	44	Glycine max	GmaAffx.90323.1.A1_s_at	CF806048	-	-	4e-7	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	C.G.	S.X.	Please select
0.04	7e-4	46	Oryza sativa	Os10g0455300	BE039930	-	Conserved hypothetical protein	4e-1	At5g15960	KIN1	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	3e-2	40	Populus trichocarpa	PtpAffx.209599.1.S1_at	pmrna18984	hypothetical protein	-	6e-2	At5g50375	CPI1 (CYCLOPROPYL ISOMERASE)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.62	2e-86	319	Triticum aestivum	Ta.13922.1.S1_at	BQ743970	-	-	5e+0	At4g23960	F-box family protein	C.G.	S.X.	Please select
0.04	1e-1	36	Vitis vinifera	1619942_at	CF568925	-	-	3e+0	At3g57370	transcription factor IIB (TFIIB) family protein	C.G.	S.X.	Please select
0.07	7e-10	63	Zea mays	Zm.443.1.S1_at	AF031083.2	aluminum-induced protein	-	1e-1	At5g46730	glycine-rich protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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