Gene omics information

Query gene ID	Contig23202_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig23202_at	Contig23202	-	-	3e-5	At5g09320	VPS9B	S.X.	H.G.	Please select
0.67	84.7	Contig23200_at	Contig23200	-	-	6e-6	At3g20810	transcription factor jumonji (jmjC) domain-containing protein	S.X.	H.G.	Please select
0.67	84.7	HG01J06u_at	HG01J06u	-	-	5e+0	At4g24600	unknown protein	S.X.	H.G.	Please select
0.44	58.9	Contig22909_at	Contig22909	-	-	3e-2	At1g20550	unknown protein	S.X.	H.G.	Please select
0.40	53.1	Contig49_x_at	Contig49	-	-	4e+0	At3g05920	heavy-metal-associated domain-containing protein	S.X.	H.G.	Please select
0.21	22.6	Contig20065_at	Contig20065	-	-	4e-1	At4g11600	ATGPX6 (GLUTATHIONE PEROXIDASE 6)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.0	98.9	GSM160744	drought control rep2	GSE6990	Barley drought stress
8.9	98.9	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.6	98.8	GSM261030	Dicktoo-control-rep1	GSE10329	Low temperature stress in cv. Dicktoo
7.9	98.7	GSM160815	drought control rep3	GSE6990	Barley drought stress
7.6	98.6	GSM161200	cold treatment rep1	GSE6993	Barley low temperature stress
6.1	98.0	GSM261032	Dicktoo control-rep3	GSE10329	Low temperature stress in cv. Dicktoo
5.9	97.9	GSM261074	Albina e-16 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.7	97.7	GSM261041	Dicktoo-deacclimation-rep3	GSE10329	Low temperature stress in cv. Dicktoo
4.9	97.1	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.9	97.1	GSM261021	ABA-Control-rep1	GSE10328	ABA experiment

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-5	50	Contig2813_at	Contig2813	-	-	1e-1	At1g01820	PEX11C (PEROXIN 11C)	C.G.	S.X.	Please select
0.02	4e-3	42	Contig4321_at	Contig4321	-	-	8e-1	At1g09640	elongation factor 1B-gamma, putative / eEF-1B gamma, putative	C.G.	S.X.	Please select
0.02	1e-2	40	Contig3472_at	Contig3472	-	-	1e-24	At5g48230	ACAT2 (ACETOACETYL-COA THIOLASE 2)	C.G.	S.X.	Please select
0.01	1e-2	40	Contig3968_at	Contig3968	-	-	3e-45	At5g47040	LON2 (LON PROTEASE 2)	C.G.	S.X.	Please select
0.01	1e-2	40	Contig3968_s_at	Contig3968	-	-	3e-45	At5g47040	LON2 (LON PROTEASE 2)	C.G.	S.X.	Please select
0.03	1e-2	40	Contig10493_at	Contig10493	-	-	6e+0	At5g10625	-	C.G.	S.X.	Please select
0.02	6e-2	38	Contig11712_at	Contig11712	-	-	3e-18	At5g10070	RNase L inhibitor protein-related	C.G.	S.X.	Please select
0.03	2e-1	36	Contig6933_s_at	Contig6933	-	-	3e-1	At3g56340	40S ribosomal protein S26 (RPS26C)	C.G.	S.X.	Please select
0.02	2e-1	36	Contig20486_at	Contig20486	-	-	5e+0	At5g35640	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-5	50	Arabidopsis thaliana	At5g09320	830791	VPS9B	F:molecular_function unknown;P:transport;C:cellular_component unknown;MPFO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e-1	38	Glycine max	GmaAffx.53612.1.A1_at	BE583680	-	-	3e+0	At5g17165	unknown protein	C.G.	S.X.	Please select
0.43	2e-91	337	Oryza sativa	Os04g0475500	9632.m03795	-	TPR-like domain containing protein	3e-2	At5g09320	VPS9B	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	2e-7	57	Populus trichocarpa	PtpAffx.204366.1.S1_at	pmrna8579	hypothetical protein	-	8e-2	At5g09320	VPS9B	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	8e+0	32	Triticum aestivum	TaAffx.83046.1.S1_at	CA662735	-	-	3e+0	At2g35658	unknown protein	C.G.	S.X.	Please select
0.02	9e+0	30	Vitis vinifera	1621399_s_at	CF372346	-	-	3e-13	At3g63190	RRF (RIBOSOME RECYCLING FACTOR, CHLOROPLAST PRECURSOR)	C.G.	S.X.	Please select
0.03	8e-1	34	Zea mays	Zm.18024.1.S1_at	AY530730.1	thylakoid assembly8	-	3e-2	At1g54215	proline-rich family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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