Gene omics information

Query gene ID	Contig23171_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig23171_at	Contig23171	-	-	2e+0	At1g11570	nuclear transport factor 2 (NTF2), putative	S.X.	H.G.	Please select
0.67	84.7	Contig18328_at	Contig18328	-	-	5e-1	Atmg00110	-	S.X.	H.G.	Please select
0.67	84.7	Contig25401_at	Contig25401	-	-	4e-3	At1g78710	unknown protein	S.X.	H.G.	Please select
0.36	47.1	Contig13168_at	Contig13168	-	-	3e+0	At5g50130	short-chain dehydrogenase/reductase (SDR) family protein	S.X.	H.G.	Please select
0.19	19.6	Contig841_x_at	Contig841	-	-	1e-35	At2g34420	LHB1B2	S.X.	H.G.	Please select
0.15	14.1	Contig26395_at	Contig26395	-	-	5e+0	At5g07460	PMSR2 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
56.4	100.0	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
54.7	100.0	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
51.0	99.9	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
8.5	98.8	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.9	98.3	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.3	98.1	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.2	98.0	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.2	97.4	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.9	97.1	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e-2	38	Contig12799_at	Contig12799	-	-	3e-6	At2g20810	GAUT10 (GALACTURONOSYLTRANSFERASE 10)	C.G.	S.X.	Please select
0.01	7e-1	34	Contig8194_at	Contig8194	-	-	2e-7	At4g37210	tetratricopeptide repeat (TPR)-containing protein	C.G.	S.X.	Please select
0.02	3e+0	32	Contig13114_at	Contig13114	-	-	1e+0	At1g14450	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	Contig17023_at	Contig17023	-	-	5e-1	At1g63030	ddf2 (DWARF AND DELAYED FLOWERING 2)	C.G.	S.X.	Please select
0.03	3e+0	32	HVSMEm0012J17r2_at	HVSMEm0012J17r2	-	-	7e-1	At1g09155	AtPP2-B15 (Phloem protein 2-B15)	C.G.	S.X.	Please select
0.02	3e+0	32	Contig15626_at	Contig15626	-	-	2e+0	At2g22330	CYP79B3	C.G.	S.X.	Please select
0.02	3e+0	32	Contig11584_at	Contig11584	-	-	5e-1	At5g25070	unknown protein	C.G.	S.X.	Please select
0.01	3e+0	32	Contig5166_at	Contig5166	-	-	7e-2	At2g39940	COI1 (CORONATINE INSENSITIVE 1)	C.G.	S.X.	Please select
0.01	3e+0	32	Contig5140_at	Contig5140	-	-	3e-5	At2g16920	UBC23 (UBIQUITIN-CONJUGATING ENZYME 23)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	34	Arabidopsis thaliana	At1g11570	837700	nuclear transport factor 2 (NTF2), putative	F:protein transporter activity;P:transport, protein import into nucleus;C:nucleus, intracellular;MFPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	1e-4	48	Glycine max	GmaAffx.31144.1.S1_at	BE805665	-	-	5e-2	At3g50070	CYCD3	C.G.	S.X.	Please select
0.34	6e-60	232	Oryza sativa	Os03g0330000	AK066736.1	-	Glycosyl transferase, family 8 protein	1e+0	At5g46780	VQ motif-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	5e-1	36	Populus trichocarpa	PtpAffx.223625.1.S1_at	pmrna41700	hypothetical protein	-	6e-18	At3g02350	GAUT9 (Galacturonosyltransferase 9)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	4e-4	46	Triticum aestivum	Ta.10979.1.A1_at	BQ166948	-	-	1e+0	At5g06430	thioredoxin-related	C.G.	S.X.	Please select
0.03	4e-1	34	Vitis vinifera	1613790_at	BQ799915	hypothetical protein LOC100258406	-	4e-88	At5g47780	GAUT4 (Galacturonosyltransferase 4)	C.G.	S.X.	Please select
0.13	9e-25	113	Zea mays	Zm.10058.1.A1_at	BM378675	hypothetical protein LOC100192027	-	2e+0	At3g27160	GHS1 (GLUCOSE HYPERSENSITIVE 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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