Gene omics information

Query gene ID	Contig23108_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig23108_at	Contig23108	-	-	8e-1	At3g16280	DNA binding / transcription factor	S.X.	H.G.	Please select
0.73	88.7	Contig21607_at	Contig21607	-	-	2e+1	At5g50710	unknown protein	S.X.	H.G.	Please select
0.73	88.7	Contig3147_at	Contig3147	-	-	3e-4	At1g09940	HEMA2	S.X.	H.G.	Please select
0.71	87.1	Contig3198_at	Contig3198	-	-	6e+0	At5g25940	early nodulin-related	S.X.	H.G.	Please select
0.67	84.7	Contig26171_at	Contig26171	-	-	2e+0	At1g52580	ATRBL5 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 5)	S.X.	H.G.	Please select
0.59	75.8	Contig18000_at	Contig18000	knotted 1	-	1e-33	At1g62360	STM (SHOOT MERISTEMLESS)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
106.6	100.0	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
96.3	100.0	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
93.0	100.0	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
28.8	99.9	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
16.2	99.6	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
15.1	99.5	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
14.5	99.5	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM398258	Martin_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.8	93.1	GSM398259	Martin_5d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.7	92.7	GSM398260	Martin_5d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.16	1e-10	65	Contig14570_at	Contig14570	aldehyde decarbonylase enzyme CER1;1-like	-	5e+0	At5g07100	WRKY26	C.G.	S.X.	Please select
0.02	1e-1	36	Contig13228_at	Contig13228	-	-	2e-1	At5g07360	amidase family protein	C.G.	S.X.	Please select
0.02	4e-1	34	Contig8162_at	Contig8162	-	-	2e-10	At5g54500	FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1)	C.G.	S.X.	Please select
0.03	6e+0	30	EBro02_SQ005_L23_at	EBro02_SQ005_L23	-	-	1e-3	At3g49470	NACA2 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2)	C.G.	S.X.	Please select
0.01	6e+0	30	Contig7936_at	Contig7936	-	-	1e-14	At4g38320	HHP5 (heptahelical protein 5)	C.G.	S.X.	Please select
0.03	6e+0	30	Contig14485_at	Contig14485	-	-	9e-2	At1g34770	MAGE-8 antigen-related	C.G.	S.X.	Please select
0.02	6e+0	30	Contig13673_at	Contig13673	-	-	5e-4	At2g29200	APUM1 (Arabidopsis Pumilio 1)	C.G.	S.X.	Please select
0.01	6e+0	30	Contig6806_at	Contig6806	-	-	2e-17	At3g25860	LTA2	C.G.	S.X.	Please select
0.04	6e+0	30	HVSMEm0023L02r2_s_at	HVSMEm0023L02r2	-	-	7e-1	At3g27416	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	8e-1	34	Arabidopsis thaliana	At3g16280	820874	DNA binding / transcription factor	encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	7e-2	38	Glycine max	GmaAffx.59645.1.S1_at	BI893626	-	-	1e-2	At5g47000	peroxidase, putative	C.G.	S.X.	Please select
0.06	1e-25	117	Oryza sativa	Os10g0471100	AF143746.1	-	Sterol desaturase family protein	5e-9	At2g37700	catalytic/ iron ion binding / oxidoreductase	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	5e-3	42	Populus trichocarpa	PtpAffx.2562.1.A1_at	CV233254	hypothetical protein	-	1e-3	At2g37700	catalytic/ iron ion binding / oxidoreductase	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.18	7e-54	210	Triticum aestivum	Ta.8290.1.S1_a_at	CK208256	-	-	2e-20	At2g37700	catalytic/ iron ion binding / oxidoreductase	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1622324_at	CF568845	-	-	1e-61	At5g61790	calnexin 1 (CNX1)	C.G.	S.X.	Please select
0.04	4e-1	34	Zea mays	Zm.11992.1.A1_at	BM382475	-	-	3e+0	At5g41614	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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