Gene omics information

Query gene ID	Contig23073_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.53	69.7	Contig23073_at	Contig23073	-	-	2e-1	At2g04622	unknown protein	S.X.	H.G.	Please select
0.60	77.3	Contig1820_at	Contig1820	-	-	8e-3	At2g15490	UGT73B4 (UDP-GLYCOSYLTRANSFERASE 73B4)	S.X.	H.G.	Please select
0.32	40.3	Contig13774_at	Contig13774	-	-	5e-1	At4g03630	root nodule development protein-related	S.X.	H.G.	Please select
0.27	32.1	Contig16086_at	Contig16086	-	-	6e-3	At4g39720	VQ motif-containing protein	S.X.	H.G.	Please select
0.26	30.4	Contig23644_at	Contig23644	-	-	2e+0	At5g37290	armadillo/beta-catenin repeat family protein	S.X.	H.G.	Please select
0.09	7.4	Contig15798_at	Contig15798	-	-	7e+0	Atcg00730	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.8	98.6	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
6.3	98.1	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.1	98.0	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.1	98.0	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.0	97.9	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.5	97.6	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley
5.5	97.6	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.9	97.1	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.7	96.9	GSM261074	Albina e-16 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.6	96.8	GSM261069	Albina f-17 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e+0	32	HO14E18S_at	HO14E18S	-	-	8e-1	At5g33898	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Contig10856_at	Contig10856	-	-	2e-4	At5g13560	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Contig3831_at	Contig3831	-	-	3e-15	At4g18960	AG (AGAMOUS)	C.G.	S.X.	Please select
0.02	6e+0	30	Contig17554_at	Contig17554	-	-	6e-1	At5g51840	unknown protein	C.G.	S.X.	Please select
0.03	6e+0	30	Contig5317_s_at	Contig5317	-	-	6e+0	At5g62360	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please select
0.02	6e+0	30	Contig5316_at	Contig5316	-	-	5e-1	At1g11572	-	C.G.	S.X.	Please select
0.03	6e+0	30	HZ01G17u_at	HZ01G17u	-	-	9e-1	At2g45630	oxidoreductase family protein	C.G.	S.X.	Please select
0.03	6e+0	30	HVSMEl0004L20r2_at	HVSMEl0004L20r2	-	-	2e+1	At5g26805	unknown protein	C.G.	S.X.	Please select
0.02	6e+0	30	Contig15147_at	Contig15147	-	-	6e-22	At3g55410	2-oxoglutarate dehydrogenase E1 component, putative / oxoglutarate decarboxylase, putative / alpha-ketoglutaric dehydrogenase, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	2e-1	36	Arabidopsis thaliana	At2g04622	6241364	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	5e+0	32	Glycine max	Gma.13377.1.S1_at	CD408470	-	-	2e+0	At2g38560	TFIIS (TRANSCRIPT ELONGATION FACTOR IIS)	C.G.	S.X.	Please select
0.04	6e+0	32	Oryza sativa	OsAffx.32173.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	5e+0	32	Populus trichocarpa	PtpAffx.41969.1.A1_at	DN491300	-	-	3e+0	At4g09970	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e+0	32	Triticum aestivum	TaAffx.53344.1.S1_at	CA693402	-	-	6e-1	At1g70480	unknown protein	C.G.	S.X.	Please select
0.04	4e+0	30	Vitis vinifera	1619672_at	CF512541	-	-	4e+0	At5g02510	unknown protein	C.G.	S.X.	Please select
0.04	6e+0	30	Zea mays	ZmAffx.55.1.A1_at	AI665054	-	-	3e+0	At1g25280	AtTLP10 (TUBBY LIKE PROTEIN 10)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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