Gene omics information

Query gene ID	Contig23066_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.53	69.7	Contig23066_at	Contig23066	-	-	1e+0	At5g54890	RNA binding	S.X.	H.G.	Please select
0.71	87.1	Contig10037_at	Contig10037	-	-	9e-1	At5g23760	heavy-metal-associated domain-containing protein	S.X.	H.G.	Please select
0.67	84.7	Contig2821_at	Contig2821	-	-	1e-72	At3g11630	2-cys peroxiredoxin, chloroplast (BAS1)	S.X.	H.G.	Please select
0.56	74.3	Contig6337_at	Contig6337	-	-	2e+0	At3g10640	VPS60.1	S.X.	H.G.	Please select
0.55	72.0	Contig3806_s_at	Contig3806	-	-	1e-3	At2g43710	SSI2	S.X.	H.G.	Please select
0.44	58.9	Contig11259_at	Contig11259	-	-	8e-4	At5g17230	phytoene synthase (PSY) / geranylgeranyl-diphosphate geranylgeranyl transferase	S.X.	H.G.	Please select
0.38	49.5	Contig3873_at	Contig3873	-	-	3e-20	At1g01060	LHY (LATE ELONGATED HYPOCOTYL)	S.X.	H.G.	Please select
0.36	47.1	Contig9509_at	Contig9509	-	-	7e-1	At3g23980	unknown protein	S.X.	H.G.	Please select
0.36	47.1	Contig6905_s_at	Contig6905	-	-	2e+0	At4g19620	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
36.4	99.9	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
25.4	99.8	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
23.0	99.8	GSM261034	Dicktoo-chilling-rep2	GSE10329	Low temperature stress in cv. Dicktoo
14.9	99.5	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
12.5	99.4	GSM238424	Endosperm 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
10.7	99.2	GSM238426	Endosperm 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
10.0	99.1	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
9.6	99.0	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.0	98.7	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.6	98.6	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e-3	42	Contig7708_at	Contig7708	-	-	2e-41	At1g09430	ACLA-3	C.G.	S.X.	Please select
0.02	6e-1	34	Contig7260_at	Contig7260	casein kinase II beta	-	1e-17	At4g17640	CKB2	C.G.	S.X.	Please select
0.03	6e-1	34	Contig15987_at	Contig15987	-	-	1e+0	At5g38390	F-box family protein	C.G.	S.X.	Please select
0.03	6e-1	34	Contig20405_at	Contig20405	-	-	2e+0	At2g17442	unknown protein	C.G.	S.X.	Please select
0.02	6e-1	34	Contig14142_at	Contig14142	-	-	8e-9	At4g08520	clathrin adaptor complex small chain family protein	C.G.	S.X.	Please select
0.01	3e+0	32	Contig9241_at	Contig9241	-	-	5e-18	At4g24290	-	C.G.	S.X.	Please select
0.01	3e+0	32	Contig3606_at	Contig3606	-	-	8e-32	At1g30580	GTP binding	C.G.	S.X.	Please select
0.02	3e+0	32	Contig18323_at	Contig18323	-	-	9e-2	At2g37660	binding / catalytic/ coenzyme binding	C.G.	S.X.	Please select
0.01	3e+0	32	Contig7838_at	Contig7838	-	-	3e-41	At4g00370	ANTR2	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e+0	34	Arabidopsis thaliana	At5g54890	835580	RNA binding	F:RNA binding;P:biological_process unknown;C:unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	5e-1	36	Glycine max	Gma.17204.1.A1_a_at	BU546349	-	-	3e+0	Atmg00120	-	C.G.	S.X.	Please select
0.03	2e-1	38	Oryza sativa	OsAffx.16011.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	5e-1	36	Populus trichocarpa	Ptp.6647.1.S1_at	DN494163	-	-	3e+0	At5g16486	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	4e-4	46	Triticum aestivum	Ta.29559.2.A1_at	BJ286244	-	-	2e-1	At2g20590	reticulon family protein	C.G.	S.X.	Please select
0.03	6e+0	30	Vitis vinifera	1620272_at	BQ797367	hypothetical protein LOC100252883	-	2e+0	At2g37330	ALS3 (ALUMINUM SENSITIVE 3)	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	Zm.8621.1.A1_at	BM338847	-	-	4e+0	At1g75300	isoflavone reductase, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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