Gene omics information

Query gene ID	Contig23045_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	90.8	Contig23045_at	Contig23045	-	-	3e-13	At1g64680	unknown protein	S.X.	H.G.	Please select
0.77	90.8	Contig10383_at	Contig10383	-	-	6e-4	At2g22540	SVP (SHORT VEGETATIVE PHASE)	S.X.	H.G.	Please select
0.73	88.7	Contig20103_at	Contig20103	-	-	4e+0	At5g20460	unknown protein	S.X.	H.G.	Please select
0.73	88.7	Contig10382_s_at	Contig10382	-	-	6e-38	At5g45190	cyclin family protein	S.X.	H.G.	Please select
0.69	85.5	HP01G01w_s_at	HP01G01w	-	-	1e+1	At5g45469	unknown protein	S.X.	H.G.	Please select
0.67	84.7	Contig19806_at	Contig19806	-	-	1e+0	At1g67080	ABA4 (abscisic acid (ABA)-deficient 4)	S.X.	H.G.	Please select
0.59	75.8	Contig8761_at	Contig8761	-	-	3e-1	At5g58010	basic helix-loop-helix (bHLH) family protein	S.X.	H.G.	Please select
0.58	74.9	Contig7156_at	Contig7156	-	-	3e+0	At1g11470	-	S.X.	H.G.	Please select
0.57	74.9	Contig1646_s_at	Contig1646	-	-	9e-19	At5g37600	ATGSR1	S.X.	H.G.	Please select
0.57	74.9	HV_CEb0017C21r2_s_at	HV_CEb0017C21r2	-	-	9e+0	At4g05180	PSBQ-2	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.4	98.5	GSM398261	HS41-1_0d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
7.2	98.5	GSM398272	HS41-1_5d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
6.8	98.3	GSM398264	HS41-1_1d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
6.8	98.3	GSM372992	genotype: 11542 - pathogen isolates: K1 - time: 0 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.7	98.3	GSM398274	Moroc9-75_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
6.7	98.3	GSM398273	Moroc9-75_0d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
6.6	98.2	GSM398268	HS41-1_3d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
6.4	98.1	GSM398269	HS41-1_3d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
6.4	98.1	GSM398266	HS41-1_1d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
6.3	98.1	GSM398267	HS41-1_3d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e-1	36	Contig15122_at	Contig15122	-	-	3e+0	At3g58910	F-box family protein	C.G.	S.X.	Please select
0.01	5e-1	34	Contig5765_at	Contig5765	-	-	8e-35	At5g58230	MSI1 (MULTICOPY SUPRESSOR OF IRA1)	C.G.	S.X.	Please select
0.02	2e+0	32	Contig4437_at	Contig4437	-	-	7e+0	At5g67600	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	HA10J02u_at	HA10J02u	-	-	1e+0	At2g03610	F-box family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Contig1625_s_at	Contig1625	-	-	2e-1	At3g29020	MYB110 (myb domain protein 110)	C.G.	S.X.	Please select
0.03	2e+0	32	Contig18688_at	Contig18688	-	-	5e+0	At5g09260	VPS20.2 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 20.2)	C.G.	S.X.	Please select
0.02	2e+0	32	Contig14763_at	Contig14763	-	-	2e-1	At2g37510	RNA-binding protein, putative	C.G.	S.X.	Please select
0.01	2e+0	32	Contig5595_at	Contig5595	-	-	4e-10	At1g10390	nucleoporin family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Contig3548_at	Contig3548	-	-	9e+0	At5g38310	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	3e-13	75	Arabidopsis thaliana	At1g64680	842776	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PBO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	34	Glycine max	GmaAffx.58953.1.S1_at	BG156309	-	-	3e-10	At5g48020	unknown protein	C.G.	S.X.	Please select
0.12	5e-23	109	Oryza sativa	Os08g0114100	AK099560.1	-	Conserved hypothetical protein	4e-27	At1g64680	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	3e-2	40	Populus trichocarpa	PtpAffx.201694.1.S1_at	pmrna3380	hypothetical protein	-	1e-1	At1g03055	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.39	3e-81	301	Triticum aestivum	Ta.19852.1.S1_at	CA660553	-	-	7e-1	At4g01610	cathepsin B-like cysteine protease, putative	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1621080_at	CF568964	-	-	1e-18	At1g28360	ERF12 (ERF DOMAIN PROTEIN 12)	C.G.	S.X.	Please select
0.21	2e-31	135	Zea mays	ZmAffx.962.1.S1_at	AI833777	-	-	3e-22	At1g64680	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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