Gene omics information

Query gene ID	Contig23019_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.81	92.8	Contig23019_at	Contig23019	-	-	2e+0	At1g73780	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	S.X.	H.G.	Please select
0.80	92.5	HA06j10r_at	HA06j10r	-	-	2e+0	At4g21920	unknown protein	S.X.	H.G.	Please select
0.73	88.7	Contig21533_at	Contig21533	-	-	2e+0	At1g24000	Bet v I allergen family protein	S.X.	H.G.	Please select
0.72	87.4	HZ55F22r_at	HZ55F22r	-	-	4e+0	At4g18740	transcription termination factor	S.X.	H.G.	Please select
0.70	86.0	HVSMEf0019I03r2_s_at	HVSMEf0019I03r2	-	-	4e+0	At3g57770	protein kinase, putative	S.X.	H.G.	Please select
0.69	85.5	HY06F24u_x_at	HY06F24u	-	-	1e+1	At5g05710	pleckstrin homology (PH) domain-containing protein	S.X.	H.G.	Please select
0.68	85.1	9507414_R_4264-4644_at	9507414_R_4264-4644	-	-	1e+1	At5g06320	NHL3	S.X.	H.G.	Please select
0.68	85.1	Contig14886_at	Contig14886	-	-	1e+0	At3g07860	unknown protein	S.X.	H.G.	Please select
0.67	84.7	HT06M11u_at	HT06M11u	-	-	1e+1	Atcg01310	-	S.X.	H.G.	Please select
0.67	84.7	Contig23039_at	Contig23039	-	-	4e-2	At2g45920	U-box domain-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
42.8	99.9	GSM282025	Control_dryseed_Morex_rep1	GSE11200	Expression data from malting barley seeds
40.1	99.9	GSM282034	Malting_steeped_Morex_rep1	GSE11200	Expression data from malting barley seeds
38.5	99.9	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
20.9	99.7	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds
12.4	99.4	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
12.0	99.3	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds
11.5	99.3	GSM71154	Morex stress and unstress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
10.9	99.2	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
10.6	99.2	GSM71140	OWB-D stress replicate 2	GSE3170	Barley single feature polymorphisms and drought stress gene expression
10.5	99.2	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	1e-2	40	HT07I17u_at	HT07I17u	-	-	1e+1	At5g64400	-	C.G.	S.X.	Please select
0.02	2e-1	36	Contig634_at	Contig634	hypothetical LOC548258	-	7e+0	At5g35620	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)	C.G.	S.X.	Please select
0.01	8e-1	34	Contig9074_at	Contig9074	-	-	3e+0	At4g32950	protein phosphatase 2C, putative / PP2C, putative	C.G.	S.X.	Please select
0.03	8e-1	34	HS07C07u_at	HS07C07u	-	-	4e+0	At5g25570	unknown protein	C.G.	S.X.	Please select
0.03	8e-1	34	Contig17069_at	Contig17069	-	-	1e-2	At1g65000	unknown protein	C.G.	S.X.	Please select
0.02	8e-1	34	Contig12788_at	Contig12788	-	-	1e-5	At1g32050	secretory carrier membrane protein (SCAMP) family protein	C.G.	S.X.	Please select
0.01	8e-1	34	Contig5219_s_at	Contig5219	-	-	3e-9	At5g42100	ATBG_PAP	C.G.	S.X.	Please select
0.01	8e-1	34	Contig3924_at	Contig3924	-	-	4e-3	At2g39020	GCN5-related N-acetyltransferase (GNAT) family protein	C.G.	S.X.	Please select
0.02	3e+0	32	Contig16075_at	Contig16075	-	-	4e-1	At5g48840	PANC (ARABIDOPSIS HOMOLOG OF BACTERIAL PANC)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	34	Arabidopsis thaliana	At1g73780	843713	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	9e-3	42	Glycine max	GmaAffx.65625.1.S1_at	BE022034	-	-	9e-2	At2g37990	ribosome biogenesis regulatory protein (RRS1) family protein	C.G.	S.X.	Please select
0.07	3e-6	54	Oryza sativa	Os.55910.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	6e-1	36	Populus trichocarpa	PtpAffx.206124.1.S1_at	pmrna12146	hypothetical protein	-	4e+0	At3g57500	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	1e-1	38	Triticum aestivum	TaAffx.12098.1.A1_at	BJ295450	-	-	4e+0	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	C.G.	S.X.	Please select
0.03	1e-1	36	Vitis vinifera	1621528_at	CF213968	hypothetical protein LOC100252217	-	4e+0	At3g55690	unknown protein	C.G.	S.X.	Please select
0.03	3e+0	32	Zea mays	Zm.9828.1.A1_at	BM340313	zinc finger protein 7	-	3e-1	At2g20260	PSAE-2 (photosystem I subunit E-2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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