Gene omics information

Query gene ID	Contig22909_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	90.8	Contig22909_at	Contig22909	-	-	3e-2	At1g20550	unknown protein	S.X.	H.G.	Please select
0.67	84.7	Contig13518_at	Contig13518	-	-	3e-12	At5g20490	XIK	S.X.	H.G.	Please select
0.55	72.0	Contig25340_at	Contig25340	-	-	8e-36	At1g31800	CYP97A3 (CYTOCHROME P450-TYPE MONOOXYGENASE 97A3)	S.X.	H.G.	Please select
0.47	62.2	Contig13519_at	Contig13519	-	-	7e-1	At3g14750	unknown protein	S.X.	H.G.	Please select
0.40	53.1	Contig23202_at	Contig23202	-	-	3e-5	At5g09320	VPS9B	S.X.	H.G.	Please select
0.33	42.6	HG01J06u_at	HG01J06u	-	-	5e+0	At4g24600	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.5	98.2	GSM398263	HS41-1_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
6.1	98.0	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
5.8	97.8	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
5.5	97.6	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
5.4	97.5	GSM261074	Albina e-16 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.1	97.3	GSM261021	ABA-Control-rep1	GSE10328	ABA experiment
4.7	96.9	GSM160823	19% SWC rep1	GSE6990	Barley drought stress
4.5	96.7	GSM160819	38% SWC rep1	GSE6990	Barley drought stress
4.5	96.7	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	5e-2	38	HD03D06r_at	HD03D06r	-	-	3e+0	At4g20260	DREPP plasma membrane polypeptide family protein	C.G.	S.X.	Please select
0.02	8e-1	34	Contig14846_at	Contig14846	-	-	1e-17	At1g07510	ftsh10 (FtsH protease 10)	C.G.	S.X.	Please select
0.03	8e-1	34	Contig20341_at	Contig20341	-	-	4e+0	At3g28710	H+-transporting two-sector ATPase, putative	C.G.	S.X.	Please select
0.02	3e+0	32	Contig10984_at	Contig10984	-	-	3e-12	At5g58980	ceramidase family protein	C.G.	S.X.	Please select
0.02	3e+0	32	Contig3907_at	Contig3907	-	-	6e-10	At5g41340	UBC4 (UBIQUITIN CONJUGATING ENZYME 4)	C.G.	S.X.	Please select
0.02	3e+0	32	Contig3155_s_at	Contig3155	-	-	8e-6	At4g14630	GLP9 (GERMIN-LIKE PROTEIN 9)	C.G.	S.X.	Please select
0.03	3e+0	32	HT11O20u_at	HT11O20u	-	-	1e-2	At4g04040	MEE51 (maternal effect embryo arrest 51)	C.G.	S.X.	Please select
0.02	3e+0	32	Contig17154_at	Contig17154	-	-	1e+0	At2g15270	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	Contig25531_at	Contig25531	-	-	2e-2	At1g63800	UBC5 (ubiquitin-conjugating enzyme 5)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	3e-2	40	Arabidopsis thaliana	At1g20550	838643	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	GmaAffx.15150.1.A1_at	BU546364	-	-	2e-2	At1g76270	unknown protein	C.G.	S.X.	Please select
0.20	4e-86	319	Oryza sativa	OsAffx.18031.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.11	4e-8	59	Populus trichocarpa	PtpAffx.127993.1.A1_at	CV236089	hypothetical protein	-	1e-28	At4g16650	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.11	1e-29	131	Triticum aestivum	Ta.12354.1.S1_a_at	BQ172174	-	-	1e-8	At4g38390	unknown protein	C.G.	S.X.	Please select
0.03	8e+0	30	Vitis vinifera	1621090_at	CB978759	hypothetical protein LOC100262179	-	3e-30	At5g22330	RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1)	C.G.	S.X.	Please select
0.02	7e-1	34	Zea mays	Zm.4476.1.S1_at	CN844697	hypothetical protein LOC100279771	-	4e+0	At3g20590	non-race specific disease resistance protein, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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