Gene omics information

Query gene ID	Contig22799_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig22799_at	Contig22799	-	-	1e+0	At4g32551	LUG (LEUNIG)	S.X.	H.G.	Please select
0.73	88.7	Contig21692_at	Contig21692	-	-	3e+0	At2g35970	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	S.X.	H.G.	Please select
0.73	88.7	Contig8795_at	Contig8795	-	-	6e-1	At2g26500	cytochrome b6f complex subunit (petM), putative	S.X.	H.G.	Please select
0.43	56.4	Contig23686_at	Contig23686	-	-	4e+0	At2g10014	unknown protein	S.X.	H.G.	Please select
0.29	35.5	Contig17421_at	Contig17421	-	-	4e+0	At1g45248	-	S.X.	H.G.	Please select
0.25	28.9	HU11L10u_s_at	HU11L10u	-	-	2e+0	At1g59865	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.1	97.3	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
4.1	96.2	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
3.7	95.5	GSM161220	cold treatment rep2	GSE6993	Barley low temperature stress
3.7	95.5	GSM68893	3 h salt stressed replicate 2	GSE3097	Barley1 salinity stress study
3.3	94.6	GSM261040	Dicktoo-deacclimation-rep2	GSE10329	Low temperature stress in cv. Dicktoo
3.3	94.6	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM160744	drought control rep2	GSE6990	Barley drought stress
3.2	94.3	GSM261025	ABA-Early-rep2	GSE10328	ABA experiment

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.32	1e-116	418	Contig15448_at	Contig15448	-	-	6e-11	At4g32551	LUG (LEUNIG)	C.G.	S.X.	Please select
0.20	2e-28	125	Contig17887_at	Contig17887	-	-	2e-3	At4g32551	LUG (LEUNIG)	C.G.	S.X.	Please select
0.02	2e-1	36	Contig8021_at	Contig8021	-	-	2e-1	At1g03110	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please select
0.03	2e-1	36	Contig13815_at	Contig13815	-	-	2e+0	At5g50130	short-chain dehydrogenase/reductase (SDR) family protein	C.G.	S.X.	Please select
0.01	6e-1	34	Contig1390_3_s_at	Contig1390_3	actin	-	0	At5g09810	ACT7 (ACTIN 7)	C.G.	S.X.	Please select
0.01	6e-1	34	Contig1390_M_at	Contig1390_M	actin	-	0	At5g09810	ACT7 (ACTIN 7)	C.G.	S.X.	Please select
0.01	6e-1	34	Contig1390_5_at	Contig1390_5	-	-	0	At5g09810	ACT7 (ACTIN 7)	C.G.	S.X.	Please select
0.01	6e-1	34	Contig1389_s_at	Contig1389	-	-	0	At5g09810	ACT7 (ACTIN 7)	C.G.	S.X.	Please select
0.02	6e-1	34	Contig13928_at	Contig13928	-	-	7e-1	At2g24140	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e+0	34	Arabidopsis thaliana	At4g32551	829390	LUG (LEUNIG)	LEUNIG regulates floral organ identity,gynoecium and ovule development. Negatively regulates AGAMOUS . Encodes a glutamine-rich protein with seven WD repeats similar to transcriptional corepressors.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e-4	48	Glycine max	Gma.15806.1.S1_at	BI967498	-	-	3e-14	At4g32551	LUG (LEUNIG)	C.G.	S.X.	Please select
0.07	3e-12	73	Oryza sativa	Os01g0607600	NM_192708.1	-	Single-stranded DNA-binding protein, SSDP familyprotein	7e-8	At2g32700	WD-40 repeat family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	7e-3	42	Populus trichocarpa	PtpAffx.19145.1.S1_at	CV241624	hypothetical protein	-	4e-11	At4g32551	LUG (LEUNIG)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.65	8e-144	510	Triticum aestivum	Ta.19219.1.S1_a_at	CA653584	-	-	1e+0	At4g32551	LUG (LEUNIG)	C.G.	S.X.	Please select
0.05	1e-4	46	Vitis vinifera	1615867_at	CF513408	-	-	7e-5	At4g32551	LUG (LEUNIG)	C.G.	S.X.	Please select
0.17	1e-23	109	Zea mays	Zm.16252.1.A1_at	CD526604	hypothetical protein LOC100217300	-	1e-1	At2g18490	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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