Gene omics information

Query gene ID	Contig2265_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig2265_at	Contig2265	-	-	4e-3	At1g72970	HTH (HOTHEAD)	S.X.	H.G.	Please select
0.91	98.1	HD05F01r_at	HD05F01r	-	-	2e+1	Atcg00540	-	S.X.	H.G.	Please select
0.67	84.7	Contig4278_at	Contig4278	-	-	7e-2	At1g76550	pyrophosphate--fructose-6-phosphate 1-phosphotransferase alpha subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative	S.X.	H.G.	Please select
0.57	74.9	Contig15772_at	Contig15772	-	-	5e-7	At3g22740	HMT3	S.X.	H.G.	Please select
0.55	72.0	Contig11812_at	Contig11812	-	-	2e-1	At3g51880	HMGB1 (HIGH MOBILITY GROUP B 1)	S.X.	H.G.	Please select
0.48	63.2	Contig1403_at	Contig1403	-	-	1e-2	At3g26430	GDSL-motif lipase/hydrolase family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
43.5	99.9	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
30.6	99.9	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
14.5	99.5	GSM146369	Golden Promise shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
14.1	99.5	GSM146376	Maythorpe shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
12.7	99.4	GSM146380	Maythorpe shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
12.6	99.4	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
11.7	99.3	GSM146375	Maythorpe shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
10.9	99.2	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
10.9	99.2	GSM146371	Golden Promise shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
10.2	99.1	GSM146374	Golden Promise shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	3e-2	40	EBro08_SQ004_I11_at	EBro08_SQ004_I11	-	-	1e+0	At4g18110	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.01	5e-1	36	Contig8108_at	Contig8108	-	-	3e-21	At4g26600	nucleolar protein, putative	C.G.	S.X.	Please select
0.06	5e-1	36	HVSMEg0008O07r2_at	HVSMEg0008O07r2	-	-	3e-1	At1g72970	HTH (HOTHEAD)	C.G.	S.X.	Please select
0.01	5e-1	36	Contig7906_at	Contig7906	-	-	3e-3	At4g37880	protein binding / zinc ion binding	C.G.	S.X.	Please select
0.01	2e+0	34	Contig1194_at	Contig1194	-	-	7e-32	At1g57720	elongation factor 1B-gamma, putative / eEF-1B gamma, putative	C.G.	S.X.	Please select
0.01	2e+0	34	HB19I03r_at	HB19I03r	-	-	2e-1	At3g16190	isochorismatase hydrolase family protein	C.G.	S.X.	Please select
0.02	2e+0	34	Contig19638_at	Contig19638	-	-	3e-4	At1g62240	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	Contig17203_at	Contig17203	-	-	9e-3	At4g17350	phosphoinositide binding	C.G.	S.X.	Please select
0.01	2e+0	34	Contig14870_at	Contig14870	-	-	9e-15	At5g51460	ATTPPA	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e-3	44	Arabidopsis thaliana	At1g72970	843628	HTH (HOTHEAD)	Originally identified as a mutation that causes floral organs to fuse together. About 10-20% of mutants also have defects in ovules. Mutants have reduced fertility most likely as because of fusions that pistil emergence. The protein has similarity to the mandelonitrile lyase family of FAD containing oxidoreductases and is predicted to be secreted (SignalP).It is expressed in all tissue layers of roots, inflorescences, stems, leaves, and flowers and is also expressed in siliques. Expression is highest in inflorescence and flower tissue.Transmission of mutant alleles to the progeny shows non mendelian segregation- a percentage of mutant alleles revert back to a previous parental (e.g. grandparental) wild type allele. It has been suggested that an RNA template driven or other extra-DNA genomic mechanism may be responsible for the non-mendelian inheritance of HTH. Reversion events in alleles at other loci have also been observed to occur in plants with an hth mutant background indicating a genome wide effect.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.20	1e-16	89	Glycine max	Gma.10072.1.S1_at	CD399353	-	-	1e-11	At1g72970	HTH (HOTHEAD)	C.G.	S.X.	Please select
0.77	0	1596	Oryza sativa	Os09g0363900	AK072899.1	-	Mandelonitrile lyase-like protein	1e-3	At1g72970	HTH (HOTHEAD)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.12	2e-11	71	Populus trichocarpa	PtpAffx.221521.1.S1_at	pmrna38448	hypothetical protein	-	2e-11	At1g72970	HTH (HOTHEAD)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.87	0	1774	Triticum aestivum	Ta.3651.1.S1_at	CK152094	-	-	1e-3	At1g12570	glucose-methanol-choline (GMC) oxidoreductase family protein	C.G.	S.X.	Please select
0.01	2e-2	40	Vitis vinifera	1609450_at	CD798635	hypothetical protein LOC100254791	-	2e+0	At1g07473	unknown protein	C.G.	S.X.	Please select
0.32	3e-88	325	Zea mays	Zm.1657.1.A1_at	BG842419	hypothetical protein LOC100192014	-	7e-2	At5g51950	glucose-methanol-choline (GMC) oxidoreductase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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