Gene omics information

Query gene ID	Contig22648_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.58	74.9	Contig22648_at	Contig22648	-	-	6e-8	At4g17310	unknown protein	S.X.	H.G.	Please select
0.86	94.8	Contig9463_at	Contig9463	-	-	3e-2	At5g23950	C2 domain-containing protein	S.X.	H.G.	Please select
0.82	93.1	Contig6808_s_at	Contig6808	-	-	5e+0	At4g07526	unknown protein	S.X.	H.G.	Please select
0.75	89.5	Contig19713_at	Contig19713	-	-	4e+0	At5g05830	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.64	80.9	Contig14951_at	Contig14951	-	-	6e-1	At3g24535	unknown protein	S.X.	H.G.	Please select
0.63	80.3	Contig24769_at	Contig24769	-	-	4e+0	At4g10767	SCRL21 (SCR-Like 21)	S.X.	H.G.	Please select
0.57	74.9	Contig11448_at	Contig11448	-	-	5e-1	At5g55507	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.55	72.0	Contig3514_at	Contig3514	-	-	3e-1	At4g02160	unknown protein	S.X.	H.G.	Please select
0.52	68.3	HVSMEk0005D04r2_s_at	HVSMEk0005D04r2	-	-	8e-42	At5g58290	RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3)	S.X.	H.G.	Please select
0.46	61.0	Contig6279_at	Contig6279	-	-	5e-2	At3g24750	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.1	97.3	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.8	97.0	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds
4.2	96.3	GSM238438	Embryo 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM261035	Dicktoo-chilling-rep3	GSE10329	Low temperature stress in cv. Dicktoo
4.1	96.2	GSM282027	Malting_day1_Legacy_rep2	GSE11200	Expression data from malting barley seeds
4.1	96.2	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM282039	Malting_day4_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.3	94.6	GSM238437	Embryo 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	1e-1	36	Contig5275_at	Contig5275	-	-	3e-22	At3g13510	unknown protein	C.G.	S.X.	Please select
0.02	1e-1	36	Contig153_at	Contig153	-	-	9e-19	At1g07820	histone H4	C.G.	S.X.	Please select
0.01	4e-1	34	Contig11945_s_at	Contig11945	-	-	1e+0	At1g13450	DNA binding protein GT-1	C.G.	S.X.	Please select
0.02	4e-1	34	Contig8238_at	Contig8238	-	-	5e-1	At5g47220	ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2)	C.G.	S.X.	Please select
0.03	2e+0	32	Contig15650_at	Contig15650	-	-	6e+0	At5g45860	Bet v I allergen family protein	C.G.	S.X.	Please select
0.03	2e+0	32	Contig9678_at	Contig9678	-	-	2e+0	At2g14700	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	32	Contig1894_at	Contig1894	-	-	1e+0	At5g56368	-	C.G.	S.X.	Please select
0.01	2e+0	32	Contig9031_at	Contig9031	-	-	2e-4	At5g18270	ANAC087	C.G.	S.X.	Please select
0.03	2e+0	32	HW09P09u_s_at	HW09P09u	-	-	4e+0	At5g07600	oleosin / glycine-rich protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.11	6e-8	57	Arabidopsis thaliana	At4g17310	827444	unknown protein	F:unknown;P:unknown;C:chloroplast;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	5e-3	42	Glycine max	GmaAffx.72561.2.S1_at	BG155858	-	-	2e-10	At4g17310	unknown protein	C.G.	S.X.	Please select
0.36	1e-29	131	Oryza sativa	OsAffx.24715.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	2e-5	50	Populus trichocarpa	PtpAffx.25638.1.S1_a_at	CV244998	hypothetical protein	-	4e-16	At4g17310	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.24	8e-26	117	Triticum aestivum	TaAffx.57652.1.S1_at	CA626274	-	-	1e-9	At4g17310	unknown protein	C.G.	S.X.	Please select
0.04	4e+0	30	Vitis vinifera	1613492_at	CB979145	-	-	2e+0	At4g32105	galactosyltransferase	C.G.	S.X.	Please select
0.17	3e-26	117	Zea mays	Zm.17347.1.S1_at	CK370714	hypothetical protein LOC100217009	-	1e-9	At4g17310	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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