Gene omics information

Query gene ID	Contig22529_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.84	94.3	Contig22529_at	Contig22529	-	-	1e-58	Atcg00740	-	S.X.	H.G.	Please select
0.36	47.1	Contig11890_at	Contig11890	-	-	4e-5	At4g21580	oxidoreductase, zinc-binding dehydrogenase family protein	S.X.	H.G.	Please select
0.36	47.1	Contig22799_at	Contig22799	-	-	1e+0	At4g32551	LUG (LEUNIG)	S.X.	H.G.	Please select
0.31	38.6	Contig15097_at	Contig15097	-	-	3e-1	At5g51720	unknown protein	S.X.	H.G.	Please select
0.26	30.4	Contig8795_at	Contig8795	-	-	6e-1	At2g26500	cytochrome b6f complex subunit (petM), putative	S.X.	H.G.	Please select
0.25	28.9	Contig7793_at	Contig7793	-	-	2e-2	At4g24590	unknown protein	S.X.	H.G.	Please select
0.25	28.9	Contig13046_at	Contig13046	-	-	5e-3	At1g17080	unknown protein	S.X.	H.G.	Please select
0.10	8.4	Contig11247_at	Contig11247	-	-	6e-2	At2g24440	selenium binding	S.X.	H.G.	Please select
0.09	7.4	rbaal31o15_at	rbaal31o15	-	-	3e-1	At1g77650	F-box family protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
30.5	99.9	GSM261065	Xantha s-46 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
29.2	99.9	GSM261062	Xantha s-46 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
26.5	99.8	GSM261057	Xantha b-12 Cotrol rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
25.9	99.8	GSM261056	Xantha b-12 Cotrol rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
25.6	99.8	GSM261063	Xantha s-46 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
19.3	99.7	GSM261066	Xantha s-46 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
18.0	99.7	GSM261069	Albina f-17 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
17.8	99.7	GSM261075	Albina e-16 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
17.2	99.6	GSM261078	Albina e-16 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
14.0	99.5	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	32	HW02D01u_at	HW02D01u	-	-	2e-1	At5g49525	unknown protein	C.G.	S.X.	Please select
0.02	8e+0	30	Contig9725_at	Contig9725	-	-	2e-10	At3g21620	early-responsive to dehydration protein-related / ERD protein-related	C.G.	S.X.	Please select
0.02	8e+0	30	Contig16005_at	Contig16005	-	-	2e+0	At5g42797	LCR28 (Low-molecular-weight cysteine-rich 28)	C.G.	S.X.	Please select
0.03	8e+0	30	Contig1195_at	Contig1195	-	-	2e-2	At1g01520	myb family transcription factor	C.G.	S.X.	Please select
0.03	8e+0	30	Contig18410_s_at	Contig18410	-	-	3e+0	At4g09649	unknown protein	C.G.	S.X.	Please select
0.02	8e+0	30	Contig17837_at	Contig17837	-	-	2e-1	At2g26570	unknown protein	C.G.	S.X.	Please select
0.01	8e+0	30	Contig4877_at	Contig4877	-	-	2e-32	At5g53530	VPS26A (VACUOLAR PROTEIN SORTING 26A)	C.G.	S.X.	Please select
0.04	8e+0	30	U43494_at	U43494	-	-	3e+0	At3g53490	unknown protein	C.G.	S.X.	Please select
0.02	8e+0	30	Contig13723_at	Contig13723	-	-	6e-1	At3g23100	XRCC4	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.34	1e-58	226	Arabidopsis thaliana	Atcg00740	-	-	RNA polymerase alpha subunit	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.68	2e-58	226	Glycine max	GmaAffx.18223.1.A1_at	BU551287	-	-	3e-174	Atcg00740	-	C.G.	S.X.	Please select
0.65	0	843	Oryza sativa	OsAffx.32331.1.A1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.14	2e-9	63	Populus trichocarpa	PtpAffx.213371.1.S1_at	pmrna26163	-	-	2e-15	Atcg00740	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.54	2e-178	624	Triticum aestivum	TaAffx.129824.3.A1_at	CA626300	-	-	1e-48	Atcg00740	-	C.G.	S.X.	Please select
0.21	5e-34	143	Vitis vinifera	1617074_s_at	CF204027.1	similar to Os04g0237300 /// similar to RNA polymerase alpha subunit /// similar to RNA polymerase alpha subunit	-	3e-128	Atcg00750	-	C.G.	S.X.	Please select
0.64	0	813	Zea mays	ZmAffx.1511.1.S1_at	11990232-52	-	-	4e-48	Atcg00740	-	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage