Gene omics information

Query gene ID	Contig22438_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.48	63.2	Contig22438_at	Contig22438	-	-	4e+0	At3g27416	unknown protein	S.X.	H.G.	Please select
0.59	75.8	Contig9233_at	Contig9233	-	-	5e-19	At4g13720	inosine triphosphate pyrophosphatase, putative / HAM1 family protein	S.X.	H.G.	Please select
0.46	61.0	Contig9234_at	Contig9234	-	-	2e-1	At1g37000	beta-galactosidase	S.X.	H.G.	Please select
0.38	49.5	Contig21187_at	Contig21187	-	-	1e+0	At3g52420	OEP7 (OUTER ENVELOPE MEMBRANE PROTEIN 7)	S.X.	H.G.	Please select
0.36	47.1	Contig21378_at	Contig21378	-	-	1e-1	At3g24070	zinc knuckle (CCHC-type) family protein	S.X.	H.G.	Please select
0.33	42.6	HK04L13r_s_at	HK04L13r	-	-	4e+0	At5g61240	protein binding	S.X.	H.G.	Please select
0.29	35.5	Contig18112_at	Contig18112	-	-	3e-1	At1g55310	SR33	S.X.	H.G.	Please select
0.17	16.9	Contig20226_at	Contig20226	-	-	4e-14	At3g59570	RabGAP/TBC domain-containing protein	S.X.	H.G.	Please select
0.13	11.6	EBma01_SQ005_G16_at	EBma01_SQ005_G16	-	-	3e+0	At2g01290	ribose-5-phosphate isomerase	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.6	99.0	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
8.4	98.8	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
8.3	98.8	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
8.2	98.7	GSM238438	Embryo 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.3	98.1	GSM238439	Embryo 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.1	98.0	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.9	97.9	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
5.8	97.8	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.5	97.6	GSM282039	Malting_day4_Morex_rep2	GSE11200	Expression data from malting barley seeds
5.2	97.4	GSM238437	Embryo 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	2e-6	52	Contig11558_at	Contig11558	-	-	1e+0	At1g33270	patatin-related	C.G.	S.X.	Please select
0.09	2e-6	52	Contig11558_s_at	Contig11558	-	-	1e+0	At1g33270	patatin-related	C.G.	S.X.	Please select
0.07	3e-5	48	HF17L22r_at	HF17L22r	-	-	9e-1	At1g33270	patatin-related	C.G.	S.X.	Please select
0.05	2e-3	42	Contig4691_at	Contig4691	-	-	2e-14	At2g45070	SEC61 BETA	C.G.	S.X.	Please select
0.04	8e-3	40	Contig6933_s_at	Contig6933	-	-	3e-1	At3g56340	40S ribosomal protein S26 (RPS26C)	C.G.	S.X.	Please select
0.02	3e-2	38	Contig4363_s_at	Contig4363	-	-	6e-26	At1g47640	unknown protein	C.G.	S.X.	Please select
0.02	1e-1	36	Contig17563_at	Contig17563	-	-	2e+0	At4g01915	unknown protein	C.G.	S.X.	Please select
0.02	1e-1	36	Contig2876_at	Contig2876	-	-	5e-2	At5g17120	-	C.G.	S.X.	Please select
0.03	5e-1	34	Contig1205_s_at	Contig1205	-	-	3e-10	At5g56030	HSP81-2 (HEAT SHOCK PROTEIN 81-2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e+0	32	Arabidopsis thaliana	At3g27416	6240637	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e-1	36	Glycine max	PsAffx.CL1825Contig1_s_at	PsAffx.CL1825Contig1	-	-	5e+0	At5g47410	unknown protein	C.G.	S.X.	Please select
0.38	4e-20	99	Oryza sativa	Os03g0622600	AK109300.1	-	Conserved hypothetical protein	5e+0	At4g04470	PMP22	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e+0	34	Populus trichocarpa	PtpAffx.222132.1.S1_x_at	pmrna39362	hypothetical protein	-	1e+0	At3g20570	plastocyanin-like domain-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.67	8e-165	579	Triticum aestivum	Ta.671.1.S1_at	BQ170682	-	-	2e+0	At4g14965	AtMAPR4 (Arabidopsis thaliana membrane-associated progesterone binding protein 4)	C.G.	S.X.	Please select
0.04	5e+0	30	Vitis vinifera	1622739_at	CD013695	-	-	4e-7	At4g25980	cationic peroxidase, putative	C.G.	S.X.	Please select
0.22	1e-10	65	Zea mays	Zm.9736.1.A1_at	BM337295	hypothetical protein LOC100276562	-	5e+0	At4g31580	SRZ-22	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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