CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig223_x_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.1 Contig223_x_at Contig223 - - 8e-1 At5g56900 CwfJ-like family protein / zinc finger (CCCH-type) family protein S.X. H.G.
0.25 28.9 HY09B17u_at HY09B17u - - 4e+0 At4g01110 - S.X. H.G.
0.13 11.6 Contig16455_at Contig16455 - - 1e-1 At3g46880 unknown protein S.X. H.G.
0.10 8.4 Contig14264_at Contig14264 - - 2e+0 At1g48780 unknown protein S.X. H.G.
0.02 1.8 HVSMEg0005C14r2_at HVSMEg0005C14r2 - - 1e+1 At4g19770 glycosyl hydrolase family 18 protein S.X. H.G.
0.01 1.1 Contig14673_at Contig14673 - - 8e+0 At5g35290 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
110.1 100.0 GSM238419 Endosperm 25DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
109.4 100.0 GSM238418 Endosperm 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
101.4 100.0 GSM238417 Endosperm 16DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
78.6 100.0 GSM238416 Endosperm 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
2.1 89.7 GSM238421 Endosperm 0 h; Seed germination Rep 2 GSE9365 Expression data from barley maturing and germinating grains
0.7 68.9 GSM238423 Endosperm 24 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
0.3 52.6 GSM238425 Endosperm 48 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
0.1 39.4 GSM238420 Endosperm 0 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
0.1 39.4 GSM238422 Endosperm 24 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
0.1 39.4 GSM440979 Stressed seed_Rep2 GSE17669 Gene expression in the barley spike during drought stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.96 0 831 Contig223_s_at Contig223 - - 8e-1 At5g56900 CwfJ-like family protein / zinc finger (CCCH-type) family protein C.G. S.X.
0.44 0 696 Contig819_at Contig819 - - 3e+0 At5g37770 TCH2 (TOUCH 2) C.G. S.X.
0.64 4e-146 515 Contig575_at Contig575 - - 4e-21 At1g56070 LOS1 C.G. S.X.
0.02 4e-4 44 Contig7023_at Contig7023 - - 3e+0 At5g65390 AGP7 C.G. S.X.
0.02 4e-1 34 Contig8416_s_at Contig8416 - - 2e+0 At1g73840 ESP1 (ENHANCED SILENCING PHENOTYPE 1) C.G. S.X.
0.04 4e-1 34 Contig20248_at Contig20248 - - 5e+0 At3g16880 F-box protein-related C.G. S.X.
0.02 4e-1 34 Contig8416_at Contig8416 - - 2e+0 At1g73840 ESP1 (ENHANCED SILENCING PHENOTYPE 1) C.G. S.X.
0.02 4e-1 34 Contig15877_at Contig15877 - - 4e-2 At4g17905 ATL4H C.G. S.X.
0.03 4e-1 34 Contig1962_s_at Contig1962 - - 3e-20 At2g40590 40S ribosomal protein S26 (RPS26B) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 8e-1 34 Arabidopsis thaliana At5g56900 835792 CwfJ-like family protein / zinc finger (CCCH-type) family protein F:zinc ion binding, catalytic activity, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MFOPB - - - C.G. S.X.
0.04 5e+0 32 Glycine max PsAffx.psML002xC09f_at PsAffx.psML002xC09f - - 3e+0 At2g44925 unknown protein C.G. S.X.
0.07 2e-6 54 Oryza sativa Os.36283.1.S1_at - - - 0 C.G. S.X.
0.04 1e+0 34 Populus trichocarpa PtpAffx.221986.1.S1_at pmrna39149 hypothetical protein - 1e+0 At3g32100 unknown protein C.G. S.X.
0.58 3e-111 400 Triticum aestivum Ta.1304.1.S1_at CA717552 serine proteinase inhibitor-like allergen - 6e+0 At2g47690 NADH-ubiquinone oxidoreductase-related C.G. S.X.
0.03 4e+0 30 Vitis vinifera 1622529_at CF404706 - - 7e-5 At5g60360 AALP (Arabidopsis aleurain-like protease) C.G. S.X.
0.12 1e-4 46 Zea mays Zm.15278.1.S1_at BM380074 hypothetical protein LOC100278126 - 1e+1 At4g16380 metal ion binding C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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