Gene omics information

Query gene ID	Contig22226_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.75	89.5	Contig22226_at	Contig22226	-	-	6e-6	At3g04670	WRKY39	S.X.	H.G.	Please select
0.32	40.3	Contig25987_at	Contig25987	-	-	2e+0	At3g61180	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.29	35.5	Contig3131_at	Contig3131	-	-	6e-6	At4g00860	ATOZI1	S.X.	H.G.	Please select
0.23	26.1	rbags16k21_s_at	rbags16k21	-	-	1e+1	At3g51520	diacylglycerol acyltransferase family	S.X.	H.G.	Please select
0.11	9.4	Contig4271_at	Contig4271	-	-	2e+0	At4g09440	unknown protein	S.X.	H.G.	Please select
0.10	8.4	Contig7004_at	Contig7004	-	-	2e+0	At4g21320	HSA32 (HEAT-STRESS-ASSOCIATED 32)	S.X.	H.G.	Please select
0.09	7.4	Contig15363_at	Contig15363	-	-	2e+0	At3g44980	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.9	99.1	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.3	98.8	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.7	98.6	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.3	98.5	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.8	98.3	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.6	97.7	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
5.3	97.4	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.1	97.3	GSM146379	Maythorpe shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.9	97.1	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.8	97.0	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.14	2e-25	115	Contig23011_at	Contig23011	-	-	3e-26	At5g28650	WRKY74	C.G.	S.X.	Please select
0.09	1e-11	69	Contig7798_at	Contig7798	-	-	7e-13	At4g31550	WRKY11	C.G.	S.X.	Please select
0.06	3e-3	42	Contig16040_at	Contig16040	-	-	2e-4	At4g31550	WRKY11	C.G.	S.X.	Please select
0.02	4e-2	38	Contig15331_at	Contig15331	-	-	1e-2	At2g42990	GDSL-motif lipase/hydrolase family protein	C.G.	S.X.	Please select
0.01	2e-1	36	Contig3884_at	Contig3884	-	-	1e+0	At1g69880	ATH8 (thioredoxin H-type 8)	C.G.	S.X.	Please select
0.01	2e-1	36	Contig1373_at	Contig1373	-	-	4e-40	At2g02000	GAD3 (glutamate decarboxylase 3)	C.G.	S.X.	Please select
0.03	3e+0	32	HY03N03T_at	HY03N03T	-	-	3e-1	At3g56580	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	3e+0	32	Contig970_at	Contig970	-	-	9e-2	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	C.G.	S.X.	Please select
0.02	3e+0	32	Contig25552_at	Contig25552	-	-	4e-11	At4g35020	ARAC3 (ARABIDOPSIS RAC-LIKE 3)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	6e-6	52	Arabidopsis thaliana	At3g04670	819625	WRKY39	member of WRKY Transcription Factor; Group II-d	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.16	8e-6	52	Glycine max	Gma.15748.1.A1_at	AI900530	transcription factor	-	2e-5	At5g28650	WRKY74	C.G.	S.X.	Please select
0.41	2e-164	579	Oryza sativa	Os.27274.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.18	4e-14	79	Populus trichocarpa	PtpAffx.61240.1.A1_at	DN487796	hypothetical protein	-	6e-40	At5g28650	WRKY74	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.26	1e-62	240	Triticum aestivum	Ta.25722.1.A1_at	CD374046	-	-	2e-2	At2g30590	WRKY21	C.G.	S.X.	Please select
0.14	7e-3	40	Vitis vinifera	1619424_at	BQ800205	hypothetical protein LOC100267695	-	5e-9	At4g23550	WRKY29	C.G.	S.X.	Please select
0.40	3e-92	337	Zea mays	Zm.18373.1.A1_at	CO520243	WRKY transcription factor 21	-	6e-2	At5g28650	WRKY74	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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