Gene omics information

Query gene ID	Contig22208_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.64	80.9	Contig22208_at	Contig22208	-	-	2e+0	At1g02330	-	S.X.	H.G.	Please select
0.86	94.8	Contig5460_s_at	Contig5460	-	-	8e-3	At1g04850	ubiquitin-associated (UBA)/TS-N domain-containing protein	S.X.	H.G.	Please select
0.83	94.0	Contig2160_at	Contig2160	-	-	2e-34	At4g38920	ATVHA-C3 (VACUOLAR-TYPE H(+)-ATPASE C3)	S.X.	H.G.	Please select
0.80	92.5	Contig21607_at	Contig21607	-	-	2e+1	At5g50710	unknown protein	S.X.	H.G.	Please select
0.80	92.5	Contig7079_at	Contig7079	-	-	3e-3	At2g18980	peroxidase, putative	S.X.	H.G.	Please select
0.78	91.2	Contig3147_at	Contig3147	-	-	3e-4	At1g09940	HEMA2	S.X.	H.G.	Please select
0.76	89.8	Contig25706_at	Contig25706	-	-	3e-1	At2g37000	TCP family transcription factor, putative	S.X.	H.G.	Please select
0.74	89.1	Contig3198_at	Contig3198	-	-	6e+0	At5g25940	early nodulin-related	S.X.	H.G.	Please select
0.67	84.7	Contig18000_at	Contig18000	knotted 1	-	1e-33	At1g62360	STM (SHOOT MERISTEMLESS)	S.X.	H.G.	Please select
0.64	80.9	Contig10718_at	Contig10718	-	-	2e-7	At1g78440	ATGA2OX1 (gibberellin 2-oxidase 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
112.6	100.0	GSM71154	Morex stress and unstress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
72.5	100.0	GSM71140	OWB-D stress replicate 2	GSE3170	Barley single feature polymorphisms and drought stress gene expression
11.0	99.2	GSM71155	Morex stress and unstress replicate 2	GSE3170	Barley single feature polymorphisms and drought stress gene expression
9.8	99.1	GSM261059	Xantha b-12 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.8	98.6	GSM71139	OWB-D stress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
7.5	98.6	GSM261050	Bonus Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.4	98.5	GSM160464	drought control rep1	GSE6990	Barley drought stress
7.3	98.5	GSM261036	Dicktoo-subzero-rep1	GSE10329	Low temperature stress in cv. Dicktoo
7.3	98.5	GSM71156	Morex stress and unstress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
6.6	98.2	GSM282025	Control_dryseed_Morex_rep1	GSE11200	Expression data from malting barley seeds

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e-1	36	Contig3321_at	Contig3321	-	-	2e+0	At5g51451	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	34	Contig16035_at	Contig16035	-	-	6e+0	At3g47590	esterase/lipase/thioesterase family protein	C.G.	S.X.	Please select
0.01	4e+0	32	Contig9620_at	Contig9620	-	-	4e-2	At4g11020	unknown protein	C.G.	S.X.	Please select
0.02	4e+0	32	Contig6831_s_at	Contig6831	-	-	2e-3	At1g12310	calmodulin, putative	C.G.	S.X.	Please select
0.02	4e+0	32	Contig23011_at	Contig23011	-	-	3e-26	At5g28650	WRKY74	C.G.	S.X.	Please select
0.01	4e+0	32	Contig22633_at	Contig22633	-	-	2e-1	At4g24060	Dof-type zinc finger domain-containing protein	C.G.	S.X.	Please select
0.02	4e+0	32	Contig22733_at	Contig22733	-	-	2e+0	At2g17800	ARAC1	C.G.	S.X.	Please select
0.02	4e+0	32	Contig21238_at	Contig21238	-	-	9e-5	At4g14770	TCX2 (TESMIN/TSO1-LIKE CXC 2)	C.G.	S.X.	Please select
0.01	4e+0	32	Contig17547_at	Contig17547	-	-	7e-7	At1g25450	KCS5 (3-KETOACYL-COA SYNTHASE 5)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	At1g02330	839367	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	8e-1	36	Glycine max	Gma.424.1.A1_at	AI442935	-	-	2e-2	At5g60390	elongation factor 1-alpha / EF-1-alpha	C.G.	S.X.	Please select
0.02	1e+0	36	Oryza sativa	Os11g0585200	AK109198.1	-	Hypothetical protein	2e+0	At3g47180	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	3e+0	34	Populus trichocarpa	PtpAffx.209801.1.S1_at	pmrna19335	hypothetical protein	-	7e+0	At5g47870	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	2e+0	34	Triticum aestivum	Ta.10528.2.S1_at	BJ315541	-	-	5e-4	At5g56840	DNA-binding family protein	C.G.	S.X.	Please select
0.03	3e+0	32	Vitis vinifera	1619435_at	CF201436.1	-	-	5e+0	At1g62190	small conjugating protein ligase	C.G.	S.X.	Please select
0.03	4e+0	32	Zea mays	ZmAffx.922.1.A1_at	AI795298	-	-	8e-1	At3g17998	CPuORF30 (Conserved peptide upstream open reading frame 30)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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