Gene omics information

Query gene ID	Contig22190_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	77.3	Contig22190_s_at	Contig22190	-	-	4e-2	At4g27745	-	S.X.	H.G.	Please select
0.80	92.5	Contig18641_at	Contig18641	-	-	5e-4	At1g68850	peroxidase, putative	S.X.	H.G.	Please select
0.67	84.7	Contig23267_at	Contig23267	-	-	5e+0	At3g03830	auxin-responsive protein, putative	S.X.	H.G.	Please select
0.50	66.9	S0001100116E08F1_x_at	S0001100116E08F1	-	-	1e+1	At3g29639	-	S.X.	H.G.	Please select
0.38	49.5	Contig17857_at	Contig17857	-	-	4e-5	At3g02600	LPP3 (LIPID PHOSPHATE PHOSPHATASE 3)	S.X.	H.G.	Please select
0.23	26.1	HB25K17r_at	HB25K17r	-	-	2e+0	At4g09260	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.2	98.5	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.0	98.4	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
6.3	98.1	GSM398263	HS41-1_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.6	97.7	GSM440974	Stressed awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress
4.9	97.1	GSM419979	Awn_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.9	97.1	GSM440970	Control awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress
4.7	96.9	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.5	96.7	GSM398270	HS41-1_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.5	96.7	GSM146365	Maythorpe Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.0	96.0	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.50	2e-153	539	Contig15213_at	Contig15213	-	-	1e-1	At4g27745	-	C.G.	S.X.	Please select
0.08	5e-12	69	rbaal10h14_at	rbaal10h14	-	-	5e-9	At5g29560	calcium ion binding	C.G.	S.X.	Please select
0.05	2e-11	67	Contig5759_at	Contig5759	-	-	5e-1	At5g50260	cysteine proteinase, putative	C.G.	S.X.	Please select
0.02	8e-8	56	Contig377_s_at	Contig377	-	-	1e+0	At2g47050	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please select
0.05	3e-7	54	Contig4860_at	Contig4860	-	-	1e-25	At5g54855	pollen Ole e 1 allergen and extensin family protein	C.G.	S.X.	Please select
0.12	3e-7	54	Contig2082_x_at	Contig2082	-	-	9e-1	At1g72416	heat shock protein binding	C.G.	S.X.	Please select
0.05	3e-7	54	Contig19752_at	Contig19752	-	-	1e+0	At2g01340	unknown protein	C.G.	S.X.	Please select
0.06	3e-7	54	Contig8030_at	Contig8030	-	-	5e+0	At5g45573	unknown protein	C.G.	S.X.	Please select
0.05	1e-6	52	Contig945_s_at	Contig945	-	-	5e+0	At3g44140	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	4e-2	38	Arabidopsis thaliana	At4g27745	3770406	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.12	2e-14	79	Glycine max	Gma.13434.1.A1_at	CD398280	-	-	7e-1	At1g45248	-	C.G.	S.X.	Please select
0.23	1e-28	127	Oryza sativa	Os07g0584000	AK068081.1	-	Yippee-like protein CG15309	4e+0	At3g22510	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	2e-10	65	Populus trichocarpa	Ptp.4063.1.S1_at	CV253300	-	-	1e+0	At3g03920	Gar1 RNA-binding region family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.63	1e-116	418	Triticum aestivum	Ta.9465.2.A1_at	CA637378	-	-	1e-3	At2g40110	yippee family protein	C.G.	S.X.	Please select
0.05	3e-6	50	Vitis vinifera	1617182_at	CB921793	-	-	5e-3	At1g62240	unknown protein	C.G.	S.X.	Please select
0.04	1e-6	52	Zea mays	Zm.13443.1.A1_at	U08225.1	Histone H2A	-	4e-11	At5g02560	HTA12	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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