Gene omics information

Query gene ID	Contig22141_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig22141_s_at	Contig22141	-	-	3e+0	At3g07440	unknown protein	S.X.	H.G.	Please select
0.83	94.0	Contig22098_at	Contig22098	-	-	4e-2	At1g01020	ARV1	S.X.	H.G.	Please select
0.60	77.3	Contig22115_at	Contig22115	-	-	7e-2	At4g24960	ATHVA22D	S.X.	H.G.	Please select
0.60	77.3	Contig2994_at	Contig2994	-	-	9e-11	At1g32470	glycine cleavage system H protein, mitochondrial, putative	S.X.	H.G.	Please select
0.20	21.1	HV08D21r_at	HV08D21r	-	-	6e+0	At3g29305	unknown protein	S.X.	H.G.	Please select
0.13	11.6	Contig6578_at	Contig6578	-	-	1e-27	At1g64650	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
14.9	99.5	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
8.0	98.7	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.6	98.2	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
6.6	98.2	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
6.2	98.0	GSM419977	Palea_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
6.2	98.0	GSM440965	Control palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
5.8	97.8	GSM398258	Martin_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.6	97.7	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.5	97.6	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.4	97.5	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.96	0	739	Contig22141_at	Contig22141	-	-	3e+0	At3g07440	unknown protein	C.G.	S.X.	Please select
0.61	3e-128	456	Contig20835_at	Contig20835	-	-	3e-1	At5g61450	2-phosphoglycerate kinase-related	C.G.	S.X.	Please select
0.03	4e-1	34	Contig10444_at	Contig10444	-	-	6e-1	At5g42232	-	C.G.	S.X.	Please select
0.04	2e+0	32	HF01L12T_at	HF01L12T	-	-	4e+0	At3g02140	TMAC2 (TWO OR MORE ABRES-CONTAINING GENE 2)	C.G.	S.X.	Please select
0.04	2e+0	32	HW05A24u_at	HW05A24u	-	-	3e+0	At1g59730	ATH7 (thioredoxin H-type 7)	C.G.	S.X.	Please select
0.02	2e+0	32	Contig1972_at	Contig1972	-	-	6e-1	At2g31862	-	C.G.	S.X.	Please select
0.02	6e+0	30	Contig8555_at	Contig8555	-	-	2e+0	At4g08670	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.02	6e+0	30	Contig22689_at	Contig22689	-	-	2e+0	At4g33730	pathogenesis-related protein, putative	C.G.	S.X.	Please select
0.04	6e+0	30	HA06j10r_at	HA06j10r	-	-	2e+0	At4g21920	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e+0	32	Arabidopsis thaliana	At3g07440	819932	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e+0	32	Glycine max	GmaAffx.71237.1.S1_at	BG157816	-	-	4e+0	At4g09960	STK (SEEDSTICK)	C.G.	S.X.	Please select
0.03	2e+1	30	Oryza sativa	OsAffx.5930.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	1e+0	34	Populus trichocarpa	PtpAffx.205913.1.S1_s_at	pmrna11730	SET domain protein /// SET domain protein	-	7e-31	At5g42400	SDG25 (SET DOMAIN PROTEIN 25)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e+0	32	Triticum aestivum	TaAffx.23311.1.S1_at	CA736812	-	-	6e-1	At2g41310	ATRR3 (RESPONSE REGULATOR 3)	C.G.	S.X.	Please select
0.04	4e+0	30	Vitis vinifera	1614611_at	CA812462	-	-	2e+0	Atcg00380	-	C.G.	S.X.	Please select
0.04	5e+0	30	Zea mays	ZmAffx.720.1.S1_at	AI739909	-	-	2e-1	At1g11572	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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