Gene omics information

Query gene ID	Contig22128_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	66.9	Contig22128_at	Contig22128	-	-	1e+0	At1g54830	NF-YC3 (NUCLEAR FACTOR Y, SUBUNIT C3)	S.X.	H.G.	Please select
0.57	74.9	Contig13127_at	Contig13127	-	-	2e+0	At4g24026	unknown protein	S.X.	H.G.	Please select
0.44	58.9	Contig7277_at	Contig7277	-	-	3e-8	At5g11110	ATSPS2F (SUCROSE PHOSPHATE SYNTHASE 2F)	S.X.	H.G.	Please select
0.40	53.1	Contig2505_at	Contig2505	-	-	9e-5	At2g36930	zinc finger (C2H2 type) family protein	S.X.	H.G.	Please select
0.27	32.1	EBem05_SQ003_O06_at	EBem05_SQ003_O06	-	-	1e+0	At2g17380	AP19	S.X.	H.G.	Please select
0.25	28.9	Contig7446_at	Contig7446	-	-	3e-1	At4g24240	WRKY7	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.7	99.2	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
10.0	99.1	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.8	98.3	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.5	97.6	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
5.2	97.4	GSM146368	Maythorpe Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.2	97.4	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.4	96.6	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
4.4	96.6	GSM146362	Golden Promise Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.3	96.4	GSM146360	Golden Promise Root Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.3	96.4	GSM146359	Golden Promise Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.29	5e-29	127	Contig15294_at	Contig15294	-	-	8e-6	At1g01510	AN (ANGUSTIFOLIA)	C.G.	S.X.	Please select
0.02	1e-1	36	Contig11276_at	Contig11276	-	-	4e-5	At5g58730	pfkB-type carbohydrate kinase family protein	C.G.	S.X.	Please select
0.02	6e-1	34	Contig5132_at	Contig5132	-	-	2e-4	At1g58280	-	C.G.	S.X.	Please select
0.03	6e-1	34	rbags1k23_at	rbags1k23	-	-	1e+0	Atmg01000	-	C.G.	S.X.	Please select
0.01	2e+0	32	Contig6173_at	Contig6173	-	-	2e-36	At3g21180	ACA9 (AUTOINHIBITED CA(2+)-ATPASE 9)	C.G.	S.X.	Please select
0.02	2e+0	32	Contig14536_at	Contig14536	-	-	2e+0	At3g04500	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.04	2e+0	32	Contig26511_at	Contig26511	-	-	2e+0	At3g50880	HhH-GPD base excision DNA repair family protein	C.G.	S.X.	Please select
0.03	2e+0	32	HO14E18S_at	HO14E18S	-	-	8e-1	At5g33898	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Contig5914_at	Contig5914	-	-	6e-7	At4g30620	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At1g54830	841922	NF-YC3 (NUCLEAR FACTOR Y, SUBUNIT C3)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, intracellular;MPFO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	GmaAffx.15794.1.S1_at	BM731379	-	-	8e-5	At3g21500	1-deoxy-D-xylulose-5-phosphate synthase	C.G.	S.X.	Please select
0.28	1e-32	141	Oryza sativa	Os03g0126100	AK111921.1	-	C-terminal binding protein	3e-46	At1g01510	AN (ANGUSTIFOLIA)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+0	34	Populus trichocarpa	PtpAffx.69782.1.S1_at	CV243564	hypothetical protein	-	8e-4	At5g08440	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	3e-1	36	Triticum aestivum	TaAffx.24811.1.S1_at	CA711846	-	-	2e-1	At2g42490	copper amine oxidase, putative	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1621999_at	CB007829	-	-	3e-1	At1g51200	zinc finger (AN1-like) family protein	C.G.	S.X.	Please select
0.03	8e+0	30	Zea mays	Zm.7685.3.A1_a_at	BM268156	-	-	4e+0	At4g27810	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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