Gene omics information

Query gene ID	Contig22098_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig22098_at	Contig22098	-	-	4e-2	At1g01020	ARV1	S.X.	H.G.	Please select
0.83	94.0	Contig22141_s_at	Contig22141	-	-	3e+0	At3g07440	unknown protein	S.X.	H.G.	Please select
0.63	80.3	Contig22115_at	Contig22115	-	-	7e-2	At4g24960	ATHVA22D	S.X.	H.G.	Please select
0.60	77.3	Contig2994_at	Contig2994	-	-	9e-11	At1g32470	glycine cleavage system H protein, mitochondrial, putative	S.X.	H.G.	Please select
0.21	22.6	Contig13352_at	Contig13352	-	-	2e-16	At2g13440	glucose-inhibited division family A protein	S.X.	H.G.	Please select
0.20	21.1	HV08D21r_at	HV08D21r	-	-	6e+0	At3g29305	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
32.0	99.9	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
21.3	99.7	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
19.7	99.7	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
18.4	99.7	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
16.3	99.6	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
15.9	99.6	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
15.1	99.5	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
14.1	99.5	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley
14.0	99.5	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
12.7	99.4	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	1e+0	34	Contig12335_at	Contig12335	-	-	5e-20	At2g22120	protein binding / zinc ion binding	C.G.	S.X.	Please select
0.02	1e+0	34	Contig10354_at	Contig10354	-	-	1e-1	At5g11930	glutaredoxin family protein	C.G.	S.X.	Please select
0.02	1e+0	34	Contig16695_at	Contig16695	-	-	2e-2	At5g20900	JAZ12 (JASMONATE-ZIM-DOMAIN PROTEIN 12)	C.G.	S.X.	Please select
0.01	4e+0	32	Contig592_at	Contig592	-	-	2e-4	At1g11860	aminomethyltransferase, putative	C.G.	S.X.	Please select
0.01	4e+0	32	Contig4533_at	Contig4533	-	-	2e-24	At3g16830	TPR2 (TOPLESS-RELATED 2)	C.G.	S.X.	Please select
0.01	4e+0	32	Contig4155_at	Contig4155	-	-	2e-38	At5g54310	AGD5 (ARF-GAP domain 5)	C.G.	S.X.	Please select
0.02	4e+0	32	Contig11714_at	Contig11714	-	-	2e-1	At5g13870	EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4)	C.G.	S.X.	Please select
0.02	4e+0	32	Contig26380_at	Contig26380	-	-	6e+0	At5g67070	RALFL34 (ralf-like 34)	C.G.	S.X.	Please select
0.02	4e+0	32	Contig21642_at	Contig21642	-	-	6e+0	At3g49550	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	4e-2	40	Arabidopsis thaliana	At1g01020	839569	ARV1	F:molecular_function unknown;P:sterol metabolic process, sphingolipid metabolic process;C:endoplasmic reticulum, membrane;MFOP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e-1	38	Glycine max	GmaAffx.69066.1.S1_at	BM308611	-	-	8e-1	At1g54620	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please select
0.31	2e-39	165	Oryza sativa	Os03g0784300	NM_185020.1	-	Conserved hypothetical protein	4e-1	At4g09649	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	3e-6	54	Populus trichocarpa	Ptp.6742.1.S1_at	DN489179	hypothetical protein	-	7e+0	At5g48335	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.47	2e-124	446	Triticum aestivum	TaAffx.118525.1.A1_at	BQ487408	-	-	1e+0	At2g34570	MEE21 (maternal effect embryo arrest 21)	C.G.	S.X.	Please select
0.02	7e-1	34	Vitis vinifera	1620015_at	CB971082	-	-	4e+0	At5g66400	RAB18 (RESPONSIVE TO ABA 18)	C.G.	S.X.	Please select
0.07	5e-18	91	Zea mays	Zm.13020.1.A1_at	CA401496	hypothetical protein LOC100278482	-	5e+0	At4g30430	TET9 (TETRASPANIN9)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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