Gene omics information

Query gene ID	Contig2200_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig2200_s_at	Contig2200	-	-	2e-3	At2g45650	AGL6 (AGAMOUS-LIKE 6)	S.X.	H.G.	Please select
0.80	92.5	Contig21985_at	Contig21985	-	-	3e+0	At3g04120	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	S.X.	H.G.	Please select
0.71	87.1	Contig13057_at	Contig13057	-	-	2e+1	At5g20060	phospholipase/carboxylesterase family protein	S.X.	H.G.	Please select
0.67	84.7	Contig19126_at	Contig19126	-	-	1e+0	At2g46810	basic helix-loop-helix (bHLH) family protein	S.X.	H.G.	Please select
0.50	66.9	Contig3835_at	Contig3835	-	-	9e-20	At5g25560	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.36	47.1	Contig3728_at	Contig3728	-	-	9e-28	At3g62560	GTP-binding protein, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
64.9	100.0	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
59.4	100.0	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
41.3	99.9	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
37.2	99.9	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
30.2	99.9	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
20.6	99.7	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
20.3	99.7	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
18.0	99.7	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
17.4	99.6	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
10.7	99.2	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.33	2e-73	276	Contig2198_at	Contig2198	-	-	3e-6	At1g24260	SEP3 (SEPALLATA3)	C.G.	S.X.	Please select
0.12	1e-40	167	Contig16350_at	Contig16350	-	-	9e-3	At3g57390	AGL18	C.G.	S.X.	Please select
0.12	1e-37	157	Contig12483_at	Contig12483	-	-	2e-3	At3g57390	AGL18	C.G.	S.X.	Please select
0.09	4e-28	125	Contig7416_at	Contig7416	-	-	2e-4	At5g60910	AGL8 (agamous-like 8)	C.G.	S.X.	Please select
0.11	4e-28	125	Contig3831_at	Contig3831	-	-	3e-15	At4g18960	AG (AGAMOUS)	C.G.	S.X.	Please select
0.12	6e-27	121	Contig11029_at	Contig11029	-	-	2e-10	At2g42830	SHP2 (SHATTERPROOF 2)	C.G.	S.X.	Please select
0.09	1e-22	107	Contig10383_at	Contig10383	-	-	6e-4	At2g22540	SVP (SHORT VEGETATIVE PHASE)	C.G.	S.X.	Please select
0.09	9e-20	97	Contig11229_at	Contig11229	-	-	2e-4	At5g60910	AGL8 (agamous-like 8)	C.G.	S.X.	Please select
0.07	2e-14	79	Contig4516_at	Contig4516	-	-	5e-11	At2g22540	SVP (SHORT VEGETATIVE PHASE)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.16	2e-3	44	Arabidopsis thaliana	At2g45650	819173	AGL6 (AGAMOUS-LIKE 6)	sequence suggests this encodes a MADS-box transcription factor	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.18	1e-21	105	Glycine max	GmaAffx.70788.1.S1_at	AI959798	-	-	8e-35	At2g03710	SEP4 (SEPALLATA 4)	C.G.	S.X.	Please select
0.49	3e-158	559	Oryza sativa	Os08g0531700	U78891.2	-	Transcription factor, MADS-box domain containingprotein	6e-7	At2g03710	SEP4 (SEPALLATA 4)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.15	3e-22	107	Populus trichocarpa	PtpAffx.207908.1.S1_at	pmrna15697	hypothetical protein	-	9e-36	At2g03710	SEP4 (SEPALLATA 4)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.80	0	759	Triticum aestivum	Ta.14469.3.S1_a_at	BJ276784	MADS-box transcription factor TaAGL16	-	3e-5	At3g61120	AGL13 (AGAMOUS-LIKE 13)	C.G.	S.X.	Please select
0.16	9e-19	93	Vitis vinifera	1615428_at	AF373601.1	MADS-box protein 2	-	2e-40	At5g15800	SEP1 (SEPALLATA1)	C.G.	S.X.	Please select
0.48	5e-163	573	Zea mays	Zm.13833.1.A1_at	CF649598	Zea mays MADS6 /// Zea mays MADS7	-	4e-5	At3g61120	AGL13 (AGAMOUS-LIKE 13)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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