CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig21980_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.75 89.5 Contig21980_at Contig21980 - - 1e-1 At3g24450 copper-binding family protein S.X. H.G.
0.78 91.2 HM04O07u_at HM04O07u - - 1e+1 At4g13520 SMAP1 (SMALL ACIDIC PROTEIN 1) S.X. H.G.
0.72 87.4 Contig7450_at Contig7450 - - 7e+0 At3g21055 PSBTN (photosystem II subunit T) S.X. H.G.
0.67 84.7 Contig7448_s_at Contig7448 - - 1e-1 At1g78340 ATGSTU22 (GLUTATHIONE S-TRANSFERASE TAU 22) S.X. H.G.
0.64 80.9 Contig16930_at Contig16930 - - 1e+0 At3g20430 unknown protein S.X. H.G.
0.64 80.9 HB20B10r_at HB20B10r - - 8e+0 At5g13410 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein S.X. H.G.
0.63 80.3 HM02K20r_at HM02K20r - - 3e+0 At4g20290 unknown protein S.X. H.G.
0.61 78.7 Contig8500_s_at Contig8500 - - 7e-1 At2g29290 tropinone reductase, putative / tropine dehydrogenase, putative S.X. H.G.
0.58 74.9 Contig19293_at Contig19293 - - 5e-1 At1g19960 - S.X. H.G.
0.56 74.3 Contig14554_at Contig14554 - - 7e+0 At5g06240 emb2735 (embryo defective 2735) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
100.5 100.0 GSM282040 Malting_kilned_Morex_rep2 GSE11200 Expression data from malting barley seeds
86.1 100.0 GSM282038 Malting_kilned_Morex_rep1 GSE11200 Expression data from malting barley seeds
41.3 99.9 GSM238431 Embryo 25DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
25.2 99.8 GSM440968 Stressed palea_Rep3 GSE17669 Gene expression in the barley spike during drought stress
17.0 99.6 GSM238433 Embryo 0 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
16.5 99.6 GSM238434 Embryo 24 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
16.3 99.6 GSM238432 Embryo 0 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
14.3 99.5 GSM238430 Embryo 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
10.6 99.2 GSM282041 Control_dryseed_Morex_rep2 GSE11200 Expression data from malting barley seeds
8.4 98.8 GSM282025 Control_dryseed_Morex_rep1 GSE11200 Expression data from malting barley seeds
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.32 7e-35 147 Contig11173_at Contig11173 - - 1e+0 At5g60800 heavy-metal-associated domain-containing protein C.G. S.X.
0.25 7e-35 147 Contig11920_s_at Contig11920 - - 4e+0 At4g35025 unknown protein C.G. S.X.
0.32 7e-35 147 Contig11173_s_at Contig11173 - - 1e+0 At5g60800 heavy-metal-associated domain-containing protein C.G. S.X.
0.13 3e-31 135 Contig11919_at Contig11919 - - 2e+0 At3g45275 - C.G. S.X.
0.06 8e-4 44 rbaal14j07_at rbaal14j07 - - 3e+1 At5g23405 high mobility group (HMG1/2) family protein C.G. S.X.
0.01 2e-1 36 Contig10253_at Contig10253 - - 3e-1 At1g51745 - C.G. S.X.
0.04 2e-1 36 Contig18058_at Contig18058 - - 7e+0 At2g32360 ubiquitin family protein C.G. S.X.
0.05 7e-1 34 HB18J17r_at HB18J17r - - 6e+0 At5g65610 unknown protein C.G. S.X.
0.01 7e-1 34 Contig4155_at Contig4155 - - 2e-38 At5g54310 AGD5 (ARF-GAP domain 5) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-1 38 Arabidopsis thaliana At3g24450 822035 copper-binding family protein F:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:endomembrane system;POM - - - C.G. S.X.
0.03 2e+0 34 Glycine max PsAffx.CL167Contig1_at PsAffx.CL167Contig1 - - 3e-5 At3g62560 GTP-binding protein, putative C.G. S.X.
0.04 1e-2 42 Oryza sativa OsAffx.504.1.S1_at - - - 0 C.G. S.X.
0.03 2e+0 34 Populus trichocarpa PtpAffx.65151.1.A1_at CK092992 - - 4e+0 At5g43570 serine-type endopeptidase inhibitor C.G. S.X.
0.03 4e-1 36 Triticum aestivum Ta.5042.1.A1_at CA690531 - - 9e-1 At2g23320 WRKY15 C.G. S.X.
0.02 2e+0 32 Vitis vinifera 1614261_at CD717598 - - 1e+0 At4g23885 unknown protein C.G. S.X.
0.03 3e+0 32 Zea mays Zm.15065.1.A1_at BM332475 hypothetical protein LOC100279235 - 3e+0 At4g05530 IBR1 (INDOLE-3-BUTYRIC ACID RESPONSE 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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