Gene omics information

Query gene ID	Contig21865_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	77.3	Contig21865_at	Contig21865	-	-	9e-1	At5g45870	Bet v I allergen family protein	S.X.	H.G.	Please select
0.60	77.3	Contig14949_at	Contig14949	-	-	3e-2	At3g19100	calcium-dependent protein kinase, putative / CDPK, putative	S.X.	H.G.	Please select
0.57	74.9	Contig13428_at	Contig13428	-	-	6e-5	At3g17160	unknown protein	S.X.	H.G.	Please select
0.46	61.0	Contig13965_at	Contig13965	-	-	7e+0	At5g55056	unknown protein	S.X.	H.G.	Please select
0.44	58.9	Contig26369_at	Contig26369	-	-	4e+0	At4g02620	vacuolar ATPase subunit F family protein	S.X.	H.G.	Please select
0.11	9.4	Contig9996_at	Contig9996	-	-	1e+0	At3g18460	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.7	98.3	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.5	98.2	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.2	98.0	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.4	97.5	GSM238438	Embryo 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.2	97.4	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.2	97.4	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.2	97.4	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
5.2	97.4	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
5.1	97.3	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.6	96.8	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	32	Contig11277_at	Contig11277	-	-	7e-7	At4g22850	-	C.G.	S.X.	Please select
0.03	2e+0	32	HVSMEb0004D21r2_at	HVSMEb0004D21r2	-	-	4e+0	At2g29530	mitochondrial import inner membrane translocase (TIM10)	C.G.	S.X.	Please select
0.04	7e+0	30	HVSMEc0003N05r2_at	HVSMEc0003N05r2	-	-	4e+0	At3g32905	unknown protein	C.G.	S.X.	Please select
0.03	7e+0	30	Contig14853_at	Contig14853	-	-	1e+0	At1g44608	unknown protein	C.G.	S.X.	Please select
0.02	7e+0	30	Contig14852_at	Contig14852	-	-	2e+0	At1g47250	PAF2	C.G.	S.X.	Please select
0.01	7e+0	30	Contig5301_at	Contig5301	-	-	1e-43	At4g38130	HD1 (HISTONE DEACETYLASE 1)	C.G.	S.X.	Please select
0.03	7e+0	30	Contig14853_s_at	Contig14853	-	-	1e+0	At1g44608	unknown protein	C.G.	S.X.	Please select
0.02	7e+0	30	Contig852_at	Contig852	-	-	2e-3	At3g23760	-	C.G.	S.X.	Please select
0.04	7e+0	30	HE01F04u_s_at	HE01F04u	-	-	3e+0	At1g51913	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	9e-1	34	Arabidopsis thaliana	At5g45870	834627	Bet v I allergen family protein	F:molecular_function unknown;P:unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	5e+0	32	Glycine max	GmaAffx.81153.1.S1_at	BM892256	-	-	2e-14	At5g48220	indole-3-glycerol phosphate synthase, putative	C.G.	S.X.	Please select
0.25	1e-35	151	Oryza sativa	Os03g0289200	AK064364.1	-	Protein of unknown function DUF649 domaincontaining protein	2e-1	At4g16140	proline-rich family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	1e+0	34	Populus trichocarpa	Ptp.7980.1.S1_at	DN502914	-	-	2e+0	At5g17130	cysteine-type peptidase	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.56	1e-166	585	Triticum aestivum	Ta.20968.1.S1_a_at	CA637080	-	-	2e+0	At5g45870	Bet v I allergen family protein	C.G.	S.X.	Please select
0.04	3e-1	34	Vitis vinifera	1621195_at	CF405454	-	-	7e-1	At3g46901	unknown protein	C.G.	S.X.	Please select
0.13	5e-25	113	Zea mays	Zm.14271.1.S1_at	AY107745.1	protein YIP1	-	3e+0	At5g44568	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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