Gene omics information

Query gene ID	Contig21692_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig21692_at	Contig21692	-	-	3e+0	At2g35970	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	S.X.	H.G.	Please select
0.91	98.1	Contig8795_at	Contig8795	-	-	6e-1	At2g26500	cytochrome b6f complex subunit (petM), putative	S.X.	H.G.	Please select
0.67	84.7	Contig22799_at	Contig22799	-	-	1e+0	At4g32551	LUG (LEUNIG)	S.X.	H.G.	Please select
0.50	66.9	Contig13944_at	Contig13944	-	-	3e-1	At2g47210	myb family transcription factor	S.X.	H.G.	Please select
0.43	56.4	Contig23686_at	Contig23686	-	-	4e+0	At2g10014	unknown protein	S.X.	H.G.	Please select
0.25	28.9	HU11L10u_s_at	HU11L10u	-	-	2e+0	At1g59865	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.7	99.3	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
10.5	99.2	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
10.1	99.1	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
8.8	98.9	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots
8.8	98.9	GSM261041	Dicktoo-deacclimation-rep3	GSE10329	Low temperature stress in cv. Dicktoo
8.3	98.8	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots
8.1	98.7	GSM160815	drought control rep3	GSE6990	Barley drought stress
7.9	98.7	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
7.8	98.6	GSM146362	Golden Promise Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.6	98.6	GSM261032	Dicktoo control-rep3	GSE10329	Low temperature stress in cv. Dicktoo

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.22	4e-47	186	Contig6587_s_at	Contig6587	-	-	1e-4	At3g52470	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	C.G.	S.X.	Please select
0.22	4e-47	186	Contig6587_at	Contig6587	-	-	1e-4	At3g52470	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	C.G.	S.X.	Please select
0.09	8e-18	89	Contig334_at	Contig334	-	-	2e+0	At1g79880	La domain-containing protein	C.G.	S.X.	Please select
0.14	3e-17	87	Contig23672_at	Contig23672	-	-	2e+1	At4g14819	unknown protein	C.G.	S.X.	Please select
0.06	3e-11	67	Contig2022_at	Contig2022	-	-	1e-7	At1g30380	PSAK (photosystem I subunit K)	C.G.	S.X.	Please select
0.05	7e-6	50	Contig5331_at	Contig5331	-	-	5e-1	At5g57000	unknown protein	C.G.	S.X.	Please select
0.05	7e-6	50	Contig5331_s_at	Contig5331	-	-	5e-1	At5g57000	unknown protein	C.G.	S.X.	Please select
0.08	3e-5	48	HVSMEh0083B17f_at	HVSMEh0083B17f	-	-	5e+0	At2g22290	ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D)	C.G.	S.X.	Please select
0.04	3e-5	48	Contig12349_at	Contig12349	-	-	2e-3	At1g78895	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e+0	32	Arabidopsis thaliana	At2g35970	818170	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	5e-3	42	Glycine max	Gma.11284.1.S1_at	AW153035	-	-	2e-4	At2g35960	NHL12	C.G.	S.X.	Please select
0.21	1e-41	171	Oryza sativa	Os11g0157200	AK070326.1	-	Harpin-induced 1 domain containing protein	1e-4	At3g52470	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e+0	34	Populus trichocarpa	PtpAffx.102055.1.A1_at	CV243889	-	-	4e+0	At3g46560	TIM9	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.52	3e-22	105	Triticum aestivum	Ta.18724.1.S1_at	CA641247	-	-	7e+0	At1g26773	unknown protein	C.G.	S.X.	Please select
0.04	6e-2	36	Vitis vinifera	1614133_at	CD711415	hypothetical protein LOC100255873	-	5e-2	At1g43800	acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative	C.G.	S.X.	Please select
0.20	6e-49	192	Zea mays	Zm.9571.1.A1_at	BM079058	hypothetical protein LOC100273203	-	5e-1	At3g11660	NHL1	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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