CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig21684_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 84.7 Contig21684_at Contig21684 - - 1e+0 At4g38740 ROC1 (ROTAMASE CYP 1) S.X. H.G.
0.67 84.7 Contig16194_at Contig16194 - - 3e+0 At3g28243 unknown protein S.X. H.G.
0.55 72.0 Contig1166_s_at Contig1166 - - 7e-18 At1g07790 HTB1 S.X. H.G.
0.50 66.9 HVSMEn0004H06r2_at HVSMEn0004H06r2 - - 4e-16 At2g18390 TTN5 (TITAN 5) S.X. H.G.
0.36 47.1 Contig12950_at Contig12950 - - 3e-6 At1g76510 ARID/BRIGHT DNA-binding domain-containing protein S.X. H.G.
0.35 45.1 HVSMEm0004M03r2_at HVSMEm0004M03r2 - - 8e+0 At4g29035 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
29.6 99.9 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
25.6 99.8 GSM238429 Embryo 16DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
20.3 99.7 GSM146369 Golden Promise shoot Control, biological rep1 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
19.0 99.7 GSM146379 Maythorpe shoot Salt, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
17.5 99.6 GSM146373 Golden Promise shoot Salt, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
16.5 99.6 GSM146375 Maythorpe shoot Control, biological rep1 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
16.0 99.6 GSM146370 Golden Promise shoot Control, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
14.3 99.5 GSM146376 Maythorpe shoot Control, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
13.3 99.4 GSM146378 Maythorpe shoot Salt, biological rep 1 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
12.3 99.4 GSM146377 Maythorpe shoot Control, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 5e-17 87 HVSMEb0004L16r2_at HVSMEb0004L16r2 - - 1e+0 At4g25820 XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9) C.G. S.X.
0.06 7e-10 63 Contig2670_x_at Contig2670 - - 5e-20 At4g25820 XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9) C.G. S.X.
0.06 7e-10 63 Contig2670_s_at Contig2670 - - 5e-20 At4g25820 XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9) C.G. S.X.
0.09 3e-9 61 Contig2672_at Contig2672 xyloglucan xyloglucosyl transferase - 2e-3 At4g25810 XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6) C.G. S.X.
0.05 4e-8 57 Contig5258_at Contig5258 - - 2e-10 At5g13870 EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4) C.G. S.X.
0.06 2e-7 56 Contig2673_at Contig2673 - - 1e-17 At4g25820 XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9) C.G. S.X.
0.05 3e-6 52 Contig12692_s_at Contig12692 - - 2e-4 At5g57540 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative C.G. S.X.
0.05 3e-6 52 Contig12692_at Contig12692 - - 2e-4 At5g57540 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative C.G. S.X.
0.05 2e-4 46 Contig2671_at Contig2671 - - 4e-8 At4g25820 XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e+0 34 Arabidopsis thaliana At4g38740 830029 ROC1 (ROTAMASE CYP 1) Encodes cytosolic cyclophilin ROC1. - - - C.G. S.X.
0.08 1e-7 57 Glycine max Gma.4220.1.A1_at CD406004 - - 4e-4 At4g03210 XTH9 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 9) C.G. S.X.
0.34 2e-99 363 Oryza sativa Os.7566.1.S1_at - - - 0 C.G. S.X.
0.04 3e-5 50 Populus trichocarpa PtpAffx.5903.1.A1_a_at CN519614 hypothetical protein - 3e-31 At4g14130 XTR7 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7) C.G. S.X.
0.47 0 749 Triticum aestivum TaAffx.17141.1.S1_x_at CD866709 - - 7e-1 At5g57540 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative C.G. S.X.
0.06 2e-2 38 Vitis vinifera 1620096_at CF372841 hypothetical protein LOC100248328 - 5e-6 At4g03210 XTH9 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 9) C.G. S.X.
0.46 6e-115 412 Zea mays Zm.14507.3.A1_at BG266679 - - 5e+0 At5g44565 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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