Gene omics information

Query gene ID	Contig21640_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	94.0	Contig21640_at	Contig21640	-	-	5e-1	At1g78340	ATGSTU22 (GLUTATHIONE S-TRANSFERASE TAU 22)	S.X.	H.G.	Please select
0.39	50.5	HM02O03r_at	HM02O03r	-	-	6e-2	At3g60540	sec61beta family protein	S.X.	H.G.	Please select
0.21	22.6	HA10D10u_x_at	HA10D10u	-	-	3e+0	At3g20220	auxin-responsive protein, putative	S.X.	H.G.	Please select
0.08	6.5	HV09A09u_s_at	HV09A09u	-	-	4e-21	At1g69410	ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3)	S.X.	H.G.	Please select
0.04	3.4	HVSMEl0002M03r2_at	HVSMEl0002M03r2	-	-	4e+1	At5g55630	ATKCO1	S.X.	H.G.	Please select
0.04	3.4	HVSMEm0001D23r2_at	HVSMEm0001D23r2	-	-	1e+0	At3g27416	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
40.4	99.9	GSM419974	Lemma_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
40.4	99.9	GSM440959	Control lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
33.4	99.9	GSM419973	Lemma_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
33.4	99.9	GSM440958	Control lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
17.8	99.7	GSM419979	Awn_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
17.8	99.7	GSM440970	Control awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress
16.1	99.6	GSM440962	Stressed lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
15.2	99.5	GSM419980	Awn_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
15.2	99.5	GSM440971	Control awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress
15.0	99.5	GSM440961	Stressed lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.17	6e-33	141	Contig14387_at	Contig14387	-	-	2e+0	At3g29785	unknown protein	C.G.	S.X.	Please select
0.16	9e-29	127	Contig7448_at	Contig7448	-	-	1e-1	At1g78340	ATGSTU22 (GLUTATHIONE S-TRANSFERASE TAU 22)	C.G.	S.X.	Please select
0.16	9e-29	127	Contig7448_s_at	Contig7448	-	-	1e-1	At1g78340	ATGSTU22 (GLUTATHIONE S-TRANSFERASE TAU 22)	C.G.	S.X.	Please select
0.14	3e-28	125	Contig13901_at	Contig13901	-	-	4e-1	At1g10140	-	C.G.	S.X.	Please select
0.18	3e-28	125	Contig5838_at	Contig5838	-	-	1e-1	At5g34940	AtGUS3 (Arabidopsis thaliana glucuronidase 3)	C.G.	S.X.	Please select
0.20	5e-27	121	Contig2489_at	Contig2489	-	-	1e-2	At1g78340	ATGSTU22 (GLUTATHIONE S-TRANSFERASE TAU 22)	C.G.	S.X.	Please select
0.10	8e-26	117	Contig9764_at	Contig9764	-	-	7e+0	At4g13140	-	C.G.	S.X.	Please select
0.09	5e-21	101	Contig8937_at	Contig8937	-	-	2e+0	At1g45145	ATTRX5	C.G.	S.X.	Please select
0.12	3e-19	95	Contig7171_s_at	Contig7171	-	-	1e-1	At2g30115	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	5e-1	36	Arabidopsis thaliana	At1g78340	844169	ATGSTU22 (GLUTATHIONE S-TRANSFERASE TAU 22)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e-3	44	Glycine max	GmaAffx.93206.1.S1_x_at	CF808931	glutathione S-transferase /// 2,4-D inducible glutathione S-transferase /// glutathione transferase	-	2e-8	At1g17180	ATGSTU25 (GLUTATHIONE S-TRANSFERASE TAU 25)	C.G.	S.X.	Please select
0.28	1e-33	145	Oryza sativa	Os10g0529400	AF402796.1	-	Tau class GST protein 4	2e-3	At4g33560	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e-2	42	Populus trichocarpa	PtpAffx.54632.1.S1_at	CV257297	hypothetical protein	-	2e-6	At1g78380	ATGSTU19 (GLUTATHIONE S-TRANSFERASE TAU 19)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.80	0	1045	Triticum aestivum	Ta.25382.1.S1_at	CD452690	-	-	7e+0	At3g55600	-	C.G.	S.X.	Please select
0.06	1e-1	36	Vitis vinifera	1617100_at	BQ794198	-	-	2e-2	At2g29460	ATGSTU4 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 4)	C.G.	S.X.	Please select
0.27	3e-28	125	Zea mays	Zm.13591.1.S1_at	AY107788.1	glutathione transferase42	-	2e+0	At1g10370	ERD9 (EARLY-RESPONSIVE TO DEHYDRATION 9)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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