Gene omics information

Query gene ID	Contig2163_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.53	69.7	Contig2163_at	Contig2163	-	-	3e-1	At2g04046	-	S.X.	H.G.	Please select
0.82	93.1	Contig18430_at	Contig18430	-	-	2e-2	At1g18340	basal transcription factor complex subunit-related	S.X.	H.G.	Please select
0.63	80.3	Contig3565_s_at	Contig3565	-	-	2e-1	At4g01430	nodulin MtN21 family protein	S.X.	H.G.	Please select
0.63	80.3	HO11K23S_s_at	HO11K23S	-	-	4e+0	At3g17420	GPK1	S.X.	H.G.	Please select
0.55	72.0	Contig7635_s_at	Contig7635	-	-	3e-1	At5g42630	ATS (ABERRANT TESTA SHAPE)	S.X.	H.G.	Please select
0.55	72.0	Contig13565_at	Contig13565	-	-	9e+0	At4g29770	-	S.X.	H.G.	Please select
0.53	69.7	Contig20065_at	Contig20065	-	-	4e-1	At4g11600	ATGPX6 (GLUTATHIONE PEROXIDASE 6)	S.X.	H.G.	Please select
0.50	66.9	HP01O07w_at	HP01O07w	-	-	3e+0	At5g16490	RIC4 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 4)	S.X.	H.G.	Please select
0.40	53.1	Contig9578_s_at	Contig9578	-	-	9e-13	At5g64030	dehydration-responsive protein-related	S.X.	H.G.	Please select
0.26	30.4	Contig5976_s_at	Contig5976	-	-	4e-58	At4g39520	GTP-binding protein, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
15.0	99.5	GSM372952	genotype: Mla6 - pathogen isolates: 5874 - time: 24 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
14.9	99.5	GSM372953	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
14.4	99.5	GSM372954	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
14.0	99.5	GSM372955	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
13.2	99.4	GSM372950	genotype: Mla6 - pathogen isolates: 5874 - time: 24 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
13.0	99.4	GSM372972	genotype: Mla6 - pathogen isolates: K1 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
12.7	99.4	GSM372969	genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
12.5	99.4	GSM372951	genotype: Mla6 - pathogen isolates: 5874 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
11.3	99.3	GSM372949	genotype: Mla6 - pathogen isolates: 5874 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
11.2	99.2	GSM372973	genotype: Mla6 - pathogen isolates: K1 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.82	4e-125	446	Contig2170_at	Contig2170	-	-	3e-1	At2g04046	-	C.G.	S.X.	Please select
0.14	9e-9	59	Contig24950_at	Contig24950	-	-	4e+0	At3g50350	unknown protein	C.G.	S.X.	Please select
0.04	5e-1	34	Contig6521_at	Contig6521	-	-	4e+0	At5g63480	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	32	Contig5587_at	Contig5587	-	-	8e-1	At2g30130	ASL5	C.G.	S.X.	Please select
0.02	2e+0	32	Contig3309_at	Contig3309	-	-	9e-37	At3g27300	G6PD5 (glucose-6-phosphate dehydrogenase 5)	C.G.	S.X.	Please select
0.02	2e+0	32	Contig2427_at	Contig2427	-	-	6e-4	At4g29260	acid phosphatase class B family protein	C.G.	S.X.	Please select
0.02	8e+0	30	Contig6182_at	Contig6182	-	-	5e-5	At1g35190	oxidoreductase, 2OG-Fe(II) oxygenase family protein	C.G.	S.X.	Please select
0.01	8e+0	30	Contig5576_at	Contig5576	-	-	9e-60	At3g16950	LPD1 (LIPOAMIDE DEHYDROGENASE 1)	C.G.	S.X.	Please select
0.01	8e+0	30	Contig9729_at	Contig9729	-	-	3e+0	At3g56580	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e-1	36	Arabidopsis thaliana	At2g04046	3768429	-	Encodes a defensin-like (DEFL) family protein.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e-1	36	Glycine max	GmaAffx.75094.1.A1_at	CD407700	-	-	7e-1	At2g41610	unknown protein	C.G.	S.X.	Please select
0.02	8e+0	32	Oryza sativa	OsAffx.14661.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	2e+1	30	Populus trichocarpa	PtpAffx.29095.3.A1_a_at	CV259220	hypothetical protein	-	9e-2	At3g13500	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.19	9e-23	107	Triticum aestivum	TaAffx.82859.1.S1_at	CA698593	-	-	2e+1	At5g53650	unknown protein	C.G.	S.X.	Please select
0.03	5e+0	30	Vitis vinifera	1611641_at	CB974655	hypothetical protein LOC100258642	-	7e-2	At5g07130	LAC13 (laccase 13)	C.G.	S.X.	Please select
0.03	7e+0	30	Zea mays	Zm.5539.1.A1_at	BG842565	hypothetical protein LOC100276652	-	5e+0	At5g03090	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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