Gene omics information

Query gene ID	Contig21617_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	77.3	Contig21617_at	Contig21617	-	-	3e-1	At4g31470	pathogenesis-related protein, putative	S.X.	H.G.	Please select
0.80	92.5	Contig4072_at	Contig4072	-	-	2e+0	At2g31610	40S ribosomal protein S3 (RPS3A)	S.X.	H.G.	Please select
0.67	84.7	Contig3558_s_at	Contig3558	-	-	2e-15	At1g24510	T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative	S.X.	H.G.	Please select
0.67	84.7	Contig30_s_at	Contig30	-	-	4e-19	At5g59690	histone H4	S.X.	H.G.	Please select
0.57	74.9	HD13H12r_s_at	HD13H12r	-	-	2e-1	At3g28710	H+-transporting two-sector ATPase, putative	S.X.	H.G.	Please select
0.44	58.9	Contig3727_at	Contig3727	-	-	5e-66	At3g62560	GTP-binding protein, putative	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
30.2	99.9	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
27.6	99.8	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
25.7	99.8	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
24.7	99.8	GSM261021	ABA-Control-rep1	GSE10328	ABA experiment
12.3	99.4	GSM261025	ABA-Early-rep2	GSE10328	ABA experiment
10.1	99.1	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
9.7	99.0	GSM160464	drought control rep1	GSE6990	Barley drought stress
8.9	98.9	GSM261024	ABA-Early-rep1	GSE10328	ABA experiment
8.8	98.9	GSM261030	Dicktoo-control-rep1	GSE10329	Low temperature stress in cv. Dicktoo
8.7	98.9	GSM160822	38% SWC rep3	GSE6990	Barley drought stress

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	9e-9	59	Contig19069_at	Contig19069	-	-	2e+1	At5g35110	unknown protein	C.G.	S.X.	Please select
0.04	8e-3	40	Contig19834_at	Contig19834	-	-	2e-1	At5g17820	peroxidase 57 (PER57) (P57) (PRXR10)	C.G.	S.X.	Please select
0.03	3e-2	38	Contig1873_at	Contig1873	-	-	5e-2	At1g44970	peroxidase, putative	C.G.	S.X.	Please select
0.02	3e-2	38	Contig9877_at	Contig9877	-	-	5e-2	At1g44970	peroxidase, putative	C.G.	S.X.	Please select
0.02	3e-2	38	Contig11509_at	Contig11509	-	-	4e-2	At1g44970	peroxidase, putative	C.G.	S.X.	Please select
0.04	3e-2	38	Contig1859_at	Contig1859	-	-	2e-1	At5g40150	peroxidase, putative	C.G.	S.X.	Please select
0.01	1e-1	36	Contig3835_s_at	Contig3835	-	-	9e-20	At5g25560	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.01	1e-1	36	Contig3835_at	Contig3835	-	-	9e-20	At5g25560	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	1e-1	36	Contig1854_at	Contig1854	-	-	2e-1	At3g49120	PRXCB (PEROXIDASE CB)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-1	36	Arabidopsis thaliana	At4g31470	829274	pathogenesis-related protein, putative	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	34	Glycine max	HgAffx.3531.1.A1_at	CK349159	-	-	3e+0	At4g10450	60S ribosomal protein L9 (RPL90D)	C.G.	S.X.	Please select
0.13	4e-20	99	Oryza sativa	Os11g0210100	AU096632	-	Peroxidase 43 precursor (EC 1.11.1.7) (AtperoxP43)	2e+0	At1g66690	S-adenosyl-L-methionine:carboxyl methyltransferase family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	6e+0	32	Populus trichocarpa	PtpAffx.30809.1.A1_at	CV260466	-	-	6e-1	At3g28120	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.42	1e-49	196	Triticum aestivum	Ta.9679.1.A1_at	CD454114	-	-	2e+0	At5g62100	ATBAG2 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 2)	C.G.	S.X.	Please select
0.03	3e-1	34	Vitis vinifera	1613506_at	CF415460	hypothetical protein LOC100266783	-	2e-5	At2g45060	-	C.G.	S.X.	Please select
0.12	3e-8	57	Zea mays	Zm.4358.1.S1_at	AI712019	-	-	1e+1	At2g04530	CPZ	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage