CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig21572_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.73 88.7 Contig21572_at Contig21572 - - 5e-1 At5g48655 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.60 77.3 Contig5297_at Contig5297 - - 4e-16 At1g64550 ATGCN3 S.X. H.G.
0.50 66.9 Contig6232_at Contig6232 - - 8e-1 At2g01720 ribophorin I family protein S.X. H.G.
0.46 61.0 Contig5117_at Contig5117 - - 8e-2 At5g60500 undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein S.X. H.G.
0.43 56.4 Contig11464_at Contig11464 - - 6e-20 At1g55740 AtSIP1 (Arabidopsis thaliana seed imbibition 1) S.X. H.G.
0.40 53.1 Contig5161_s_at Contig5161 - - 9e-3 At1g54860 unknown protein S.X. H.G.
0.38 49.5 Contig6995_at Contig6995 - - 2e-8 At5g57270 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.6 98.8 GSM215729 gibberellin plus Yariv-reagent treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
7.8 98.6 GSM382234 Root_Hg3 GSE15295 Mercury toxicity in barley roots
7.5 98.6 GSM215732 gibberellin plus Yariv-reagent treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
7.5 98.6 GSM372955 genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.9 98.3 GSM238410 Pericarp 8DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
6.3 98.1 GSM382233 Root_Hg2 GSE15295 Mercury toxicity in barley roots
5.9 97.9 GSM372969 genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.0 97.2 GSM398256 Martin_3d_rep2 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.9 97.1 GSM146368 Maythorpe Root Salt, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.8 97.0 GSM71141 OWB-D stress replicate 3 GSE3170 Barley single feature polymorphisms and drought stress gene expression
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.47 9e-112 402 Contig3651_s_at Contig3651 - - 1e+1 At5g25010 unknown protein C.G. S.X.
0.47 9e-112 402 Contig3651_at Contig3651 - - 1e+1 At5g25010 unknown protein C.G. S.X.
0.17 6e-42 171 Contig3650_at Contig3650 - - 3e+0 At1g44835 YbaK/prolyl-tRNA synthetase family protein C.G. S.X.
0.17 6e-42 171 Contig3650_s_at Contig3650 - - 3e+0 At1g44835 YbaK/prolyl-tRNA synthetase family protein C.G. S.X.
0.17 5e-30 131 Contig3652_at Contig3652 - - 3e+0 At1g44835 YbaK/prolyl-tRNA synthetase family protein C.G. S.X.
0.02 9e-1 34 HZ36N03r_at HZ36N03r - - 5e+0 At5g58900 myb family transcription factor C.G. S.X.
0.01 4e+0 32 Contig7701_at Contig7701 - - 6e-15 At3g07050 GTP-binding family protein C.G. S.X.
0.02 4e+0 32 Contig12762_at Contig12762 - - 2e-16 At2g35920 helicase domain-containing protein C.G. S.X.
0.02 4e+0 32 Contig16397_at Contig16397 - - 5e+0 At5g63170 GDSL-motif lipase, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 5e-1 36 Arabidopsis thaliana At5g48655 834923 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:response to chitin;C:unknown;MFOPV - - - C.G. S.X.
0.03 3e+0 34 Glycine max HgAffx.24087.1.S1_at CD748182 - - 1e+1 At5g59950 RNA and export factor-binding protein, putative C.G. S.X.
0.09 3e-13 77 Oryza sativa Os01g0919500 AK059108.1 - Zn-finger, RING domain containing protein 2e+0 At2g01260 unknown protein C.G. S.X.
0.03 3e+0 34 Populus trichocarpa PtpAffx.50257.1.A1_s_at CV252700 hypothetical protein - 7e-1 At1g55990 glycine-rich protein C.G. S.X.
0.49 2e-95 349 Triticum aestivum TaAffx.30725.1.S1_at CA622632 - - 1e+0 At1g03170 unknown protein C.G. S.X.
0.02 5e-1 34 Vitis vinifera 1620466_at CB007446 hypothetical protein LOC100246357 - 7e-27 At5g56280 CSN6A C.G. S.X.
0.02 3e+0 32 Zea mays Zm.17360.1.A1_at CK370832 hypothetical protein LOC100191843 - 4e-7 At3g06080 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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