Gene omics information

Query gene ID	Contig21454_x_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig21454_x_at	Contig21454	-	-	4e+0	At4g01265	raffinose synthase family protein / seed imbibition protein-related	S.X.	H.G.	Please select
0.91	98.1	Contig15145_at	Contig15145	-	-	1e-61	At3g09920	PIP5K9 (PHOSPHATIDYL INOSITOL MONOPHOSPHATE 5 KINASE)	S.X.	H.G.	Please select
0.91	98.1	HV_CEa0012H15r2_at	HV_CEa0012H15r2	-	-	4e+0	At1g11450	nodulin MtN21 family protein	S.X.	H.G.	Please select
0.91	98.1	Contig9426_at	Contig9426	-	-	2e-2	At5g51340	unknown protein	S.X.	H.G.	Please select
0.83	94.0	Contig23898_at	Contig23898	-	-	4e-1	At2g01610	invertase/pectin methylesterase inhibitor family protein	S.X.	H.G.	Please select
0.57	74.9	Contig21304_s_at	Contig21304	-	-	3e+0	At5g10390	histone H3	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
23.3	99.8	GSM130801	salinity stress, biological rep1	GSE5605	Expression data from barley under salinity stress and JA treatment
20.2	99.7	GSM261040	Dicktoo-deacclimation-rep2	GSE10329	Low temperature stress in cv. Dicktoo
20.0	99.7	GSM130805	JA and salinity stress, biological rep1	GSE5605	Expression data from barley under salinity stress and JA treatment
17.9	99.7	GSM261036	Dicktoo-subzero-rep1	GSE10329	Low temperature stress in cv. Dicktoo
17.9	99.7	GSM130802	salinity stress, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
15.8	99.6	GSM130806	JA and salinity stress, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
15.0	99.5	GSM261037	Dicktoo-subzero-rep2	GSE10329	Low temperature stress in cv. Dicktoo
15.0	99.5	GSM261038	Dicktoo-subzero-rep3	GSE10329	Low temperature stress in cv. Dicktoo
11.1	99.2	GSM261033	Dicktoo-chilling-rep1	GSE10329	Low temperature stress in cv. Dicktoo
10.3	99.1	GSM261034	Dicktoo-chilling-rep2	GSE10329	Low temperature stress in cv. Dicktoo

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.21	4e-11	65	HVSMEn0016A20r2_s_at	HVSMEn0016A20r2	-	-	9e-1	At3g59650	mitochondrial ribosomal protein L51/S25/CI-B8 family protein	C.G.	S.X.	Please select
0.21	4e-11	65	HVSMEn0016A20r2_at	HVSMEn0016A20r2	-	-	9e-1	At3g59650	mitochondrial ribosomal protein L51/S25/CI-B8 family protein	C.G.	S.X.	Please select
0.04	2e-3	40	Contig7822_at	Contig7822	-	-	2e-1	At4g09990	unknown protein	C.G.	S.X.	Please select
0.02	5e-1	32	Contig15585_at	Contig15585	-	-	6e-97	At1g79050	DNA repair protein recA	C.G.	S.X.	Please select
0.06	2e+0	30	Contig13218_at	Contig13218	-	-	3e+0	At5g64360	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select
0.01	2e+0	30	Contig10129_at	Contig10129	-	-	6e-2	At5g15140	aldose 1-epimerase family protein	C.G.	S.X.	Please select
0.03	8e+0	28	Contig1353_s_at	Contig1353	-	-	1e-1	At4g11300	unknown protein	C.G.	S.X.	Please select
0.03	8e+0	28	Contig6604_at	Contig6604	-	-	1e-4	At1g18100	E12A11	C.G.	S.X.	Please select
0.02	8e+0	28	Contig5759_at	Contig5759	-	-	5e-1	At5g50260	cysteine proteinase, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e+0	30	Arabidopsis thaliana	At4g01265	828082	raffinose synthase family protein / seed imbibition protein-related	Pseudogene of AT4G01265; raffinose synthase family protein	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	6e+0	30	Glycine max	PsAffx.psML002xE17f_at	PsAffx.psML002xE17f	-	-	3e+0	At1g57765	unknown protein	C.G.	S.X.	Please select
0.03	8e+0	30	Oryza sativa	OsAffx.17329.1.S1_s_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	1e+0	32	Populus trichocarpa	Ptp.6333.2.S1_at	CK093044	hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase	-	3e-1	At4g20780	calcium-binding protein, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	1e+0	32	Triticum aestivum	TaAffx.31053.1.S1_at	CA619965	-	-	2e-4	At4g24920	protein transport protein SEC61 gamma subunit, putative	C.G.	S.X.	Please select
0.04	2e+1	26	Vitis vinifera	1620529_at	CF215047	-	-	1e+0	At2g18410	unknown protein	C.G.	S.X.	Please select
0.05	4e-1	32	Zea mays	Zm.15254.1.A1_at	BM347970	-	-	4e+0	At4g24110	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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