Gene omics information

Query gene ID	Contig2139_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	88.7	Contig2139_at	Contig2139	-	-	4e-6	At1g64720	CP5	S.X.	H.G.	Please select
0.36	47.1	HVSMEh0080N02r2_at	HVSMEh0080N02r2	-	-	8e-3	At5g64040	PSAN	S.X.	H.G.	Please select
0.23	26.1	EBem09_SQ002_L08_s_at	EBem09_SQ002_L08	-	-	1e-1	At2g27790	nucleic acid binding / nucleotide binding	S.X.	H.G.	Please select
0.20	21.1	X93170_at	X93170	-	-	8e-28	At3g02520	GRF7 (GENERAL REGULATORY FACTOR 7)	S.X.	H.G.	Please select
0.19	19.6	HX04J05u_at	HX04J05u	-	-	1e+0	At1g64200	VHA-E3 (VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 3)	S.X.	H.G.	Please select
0.05	4.1	HA06g08r_x_at	HA06g08r	-	-	8e-7	At5g04750	F1F0-ATPase inhibitor protein, putative	S.X.	H.G.	Please select
0.02	1.8	Contig14509_at	Contig14509	-	-	6e-23	At4g13670	PTAC5 (PLASTID TRANSCRIPTIONALLY ACTIVE5)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
16.2	99.6	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
13.9	99.5	GSM261058	Xantha b-12 Cotrol rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
13.4	99.4	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
11.9	99.3	GSM261057	Xantha b-12 Cotrol rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
11.8	99.3	GSM261063	Xantha s-46 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
9.8	99.1	GSM261056	Xantha b-12 Cotrol rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.5	98.8	GSM261061	Xantha b-12 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.5	98.6	GSM261069	Albina f-17 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.4	98.5	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.3	98.5	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	3e-8	59	Contig3338_s_at	Contig3338	-	-	8e-4	At3g23080	-	C.G.	S.X.	Please select
0.11	2e-3	44	Contig3339_at	Contig3339	-	-	9e-6	At1g64720	CP5	C.G.	S.X.	Please select
0.02	7e-3	42	Contig5322_at	Contig5322	-	-	4e-1	At5g37550	unknown protein	C.G.	S.X.	Please select
0.02	7e-3	42	HY07F05u_x_at	HY07F05u	-	-	9e+0	At4g26288	-	C.G.	S.X.	Please select
0.01	7e-3	42	Contig12366_at	Contig12366	-	-	9e-134	At5g05620	GCP2 (GAMMA-TUBULIN COMPLEX PROTEIN 2)	C.G.	S.X.	Please select
0.02	7e-3	42	Contig5322_s_at	Contig5322	-	-	4e-1	At5g37550	unknown protein	C.G.	S.X.	Please select
0.02	3e-2	40	Contig1244_s_at	Contig1244	-	-	3e-2	At2g39050	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.01	3e-2	40	Contig4591_at	Contig4591	-	-	4e-2	At4g22890	PGR5-LIKE A	C.G.	S.X.	Please select
0.02	3e-2	40	Contig19862_at	Contig19862	-	-	6e-2	At5g47550	cysteine protease inhibitor, putative / cystatin, putative	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	4e-6	54	Arabidopsis thaliana	At1g64720	842780	CP5	membrane related protein CP5	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	8e-2	40	Glycine max	Gma.12124.1.S1_at	BG650294	-	-	5e-19	At4g14500	-	C.G.	S.X.	Please select
0.61	0	819	Oryza sativa	Os.11750.1.A1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	2e-2	42	Populus trichocarpa	PtpAffx.1508.1.S1_at	CV253876	hypothetical protein	-	1e-23	At1g64720	CP5	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.56	0	1122	Triticum aestivum	Ta.12695.1.S1_at	CD373734	-	-	8e-3	At5g54170	-	C.G.	S.X.	Please select
0.02	7e-5	48	Vitis vinifera	1617345_s_at	CF514945	hypothetical protein LOC100247984	-	3e-21	At1g64720	CP5	C.G.	S.X.	Please select
0.23	6e-37	155	Zea mays	Zm.12304.1.A1_at	CF637007	hypothetical protein LOC100274389	-	2e+0	At1g64720	CP5	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage