Gene omics information

Query gene ID	Contig2135_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.59	75.8	Contig2135_s_at	Contig2135	-	-	4e-2	At5g23660	MTN3 (Arabidopsis homolog of Medicago truncatula MTN3)	S.X.	H.G.	Please select
0.56	74.3	Contig8146_at	Contig8146	-	-	6e-30	At1g79830	GC5 (golgin candidate 5)	S.X.	H.G.	Please select
0.47	62.2	Contig18534_at	Contig18534	-	-	8e-1	At2g33775	RALFL19 (ralf-like 19)	S.X.	H.G.	Please select
0.47	62.2	Contig17424_at	Contig17424	-	-	6e-6	At5g16060	-	S.X.	H.G.	Please select
0.39	50.5	Contig11048_at	Contig11048	-	-	9e+0	At5g51545	LPA2 (low psii accumulation2)	S.X.	H.G.	Please select
0.35	45.1	Contig10064_at	Contig10064	-	-	2e+0	At2g12465	LCR50 (Low-molecular-weight cysteine-rich 50)	S.X.	H.G.	Please select
0.35	45.1	Contig9632_at	Contig9632	-	-	1e-1	At1g78370	ATGSTU20 (GLUTATHIONE S-TRANSFERASE TAU 20)	S.X.	H.G.	Please select
0.33	42.6	Contig1498_s_at	Contig1498	-	-	7e-12	At4g25740	40S ribosomal protein S10 (RPS10A)	S.X.	H.G.	Please select
0.32	40.3	Contig13002_at	Contig13002	-	-	2e-10	At1g45150	unknown protein	S.X.	H.G.	Please select
0.31	38.6	Contig24555_at	Contig24555	-	-	1e+0	At2g45070	SEC61 BETA	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.9	97.9	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.6	97.7	GSM372959	genotype: Mla6 - pathogen isolates: K1 - time: 8 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.6	97.7	GSM372960	genotype: Mla6 - pathogen isolates: K1 - time: 8 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.5	97.6	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.2	97.4	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.0	97.2	GSM372978	genotype: 11542 - pathogen isolates: 5874 - time: 8 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.0	97.2	GSM372941	genotype: Mla6 - pathogen isolates: 5874 - time: 8 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.5	96.7	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.4	96.6	GSM372957	genotype: Mla6 - pathogen isolates: K1 - time: 0 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.2	96.3	GSM372947	genotype: Mla6 - pathogen isolates: 5874 - time: 20 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.36	5e-89	325	Contig2133_x_at	Contig2133	-	-	4e-2	At5g23660	MTN3 (Arabidopsis homolog of Medicago truncatula MTN3)	C.G.	S.X.	Please select
0.36	5e-89	325	Contig2133_s_at	Contig2133	-	-	4e-2	At5g23660	MTN3 (Arabidopsis homolog of Medicago truncatula MTN3)	C.G.	S.X.	Please select
0.19	2e-54	210	Contig2134_at	Contig2134	-	-	7e-4	At5g23660	MTN3 (Arabidopsis homolog of Medicago truncatula MTN3)	C.G.	S.X.	Please select
0.15	5e-15	79	rbaal10b23_at	rbaal10b23	-	-	7e+0	At2g16700	ADF5 (ACTIN DEPOLYMERIZING FACTOR 5)	C.G.	S.X.	Please select
0.07	1e-6	52	Contig13823_at	Contig13823	-	-	2e-4	At5g13170	SAG29 (SENESCENCE-ASSOCIATED PROTEIN 29)	C.G.	S.X.	Please select
0.03	7e-2	36	Contig8708_at	Contig8708	-	-	2e-1	At5g50790	nodulin MtN3 family protein	C.G.	S.X.	Please select
0.01	3e-1	34	Contig13556_at	Contig13556	-	-	8e-14	At2g37590	Dof-type zinc finger domain-containing protein	C.G.	S.X.	Please select
0.02	1e+0	32	Contig14283_at	Contig14283	-	-	6e-1	At5g07100	WRKY26	C.G.	S.X.	Please select
0.01	1e+0	32	Contig8214_at	Contig8214	-	-	2e-1	At2g40150	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	4e-2	38	Arabidopsis thaliana	At5g23660	832431	MTN3 (Arabidopsis homolog of Medicago truncatula MTN3)	homolog of the Medicago nodulin MTN3	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	8e-1	34	Glycine max	GmaAffx.83966.1.S1_at	CA936569	-	-	3e+0	At3g61310	DNA-binding family protein	C.G.	S.X.	Please select
0.10	6e-30	131	Oryza sativa	Os11g0508600	AK101913.1	-	MtN3 protein precursor	8e-7	At5g23660	MTN3 (Arabidopsis homolog of Medicago truncatula MTN3)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	3e+0	32	Populus trichocarpa	PtpAffx.223075.1.S1_at	pmrna40880	hypothetical protein	-	6e+0	At2g19690	PLA2-BETA (PHOSPHOLIPASE A2-BETA)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.26	5e-51	200	Triticum aestivum	Ta.28377.1.S1_at	CK161941	-	-	8e-1	At5g23660	MTN3 (Arabidopsis homolog of Medicago truncatula MTN3)	C.G.	S.X.	Please select
0.05	2e-1	34	Vitis vinifera	1608560_at	CF405443	hypothetical protein LOC100250989	-	3e+0	At3g09890	ankyrin repeat family protein	C.G.	S.X.	Please select
0.11	5e-21	99	Zea mays	Zm.1482.3.A1_at	AY105872.1	hypothetical protein LOC100273779	-	4e-5	At5g50790	nodulin MtN3 family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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