CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig21303_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.80 92.5 Contig21303_at Contig21303 - - 2e+0 At2g14890 AGP9 (ARABINOGALACTAN PROTEIN 9) S.X. H.G.
0.83 94.0 Contig982_at Contig982 - - 2e-1 At5g20520 WAV2 (WAVY GROWTH 2) S.X. H.G.
0.80 92.5 HVSMEg0015A14r2_at HVSMEg0015A14r2 - - 1e+0 At5g03905 hesB-like domain-containing protein S.X. H.G.
0.44 58.9 HVSMEg0017M01r2_at HVSMEg0017M01r2 - - 5e+0 At5g53120 SPDS3 (SPERMIDINE SYNTHASE 3) S.X. H.G.
0.40 53.1 HP01O07w_at HP01O07w - - 3e+0 At5g16490 RIC4 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 4) S.X. H.G.
0.24 27.2 HVSMEb0005F19r2_at HVSMEb0005F19r2 - - 3e-1 At4g09010 APX4 (ASCORBATE PEROXIDASE 4) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
71.2 100.0 GSM71140 OWB-D stress replicate 2 GSE3170 Barley single feature polymorphisms and drought stress gene expression
34.6 99.9 GSM71154 Morex stress and unstress replicate 1 GSE3170 Barley single feature polymorphisms and drought stress gene expression
14.4 99.5 GSM282036 Malting_steeped_Morex_rep2 GSE11200 Expression data from malting barley seeds
13.0 99.4 GSM71156 Morex stress and unstress replicate 3 GSE3170 Barley single feature polymorphisms and drought stress gene expression
10.1 99.1 GSM71155 Morex stress and unstress replicate 2 GSE3170 Barley single feature polymorphisms and drought stress gene expression
8.0 98.7 GSM71141 OWB-D stress replicate 3 GSE3170 Barley single feature polymorphisms and drought stress gene expression
7.9 98.7 GSM71139 OWB-D stress replicate 1 GSE3170 Barley single feature polymorphisms and drought stress gene expression
7.8 98.6 GSM71145 OWB-D unstress replicate 1 GSE3170 Barley single feature polymorphisms and drought stress gene expression
5.5 97.6 GSM282031 Malting_day1_Harrington_rep1 GSE11200 Expression data from malting barley seeds
5.0 97.2 GSM372984 genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 7e-2 38 Contig8194_at Contig8194 - - 2e-7 At4g37210 tetratricopeptide repeat (TPR)-containing protein C.G. S.X.
0.00 1e+0 34 Contig7937_s_at Contig7937 - - 1e-3 At5g11720 alpha-glucosidase 1 (AGLU1) C.G. S.X.
0.01 1e+0 34 Contig10693_at Contig10693 - - 7e-1 At1g28640 GDSL-motif lipase, putative C.G. S.X.
0.02 1e+0 34 Contig16971_at Contig16971 - - 3e-1 At4g30860 SDG4 (SET DOMAIN GROUP 4) C.G. S.X.
0.01 1e+0 34 Contig7938_at Contig7938 - - 4e-4 At5g11720 alpha-glucosidase 1 (AGLU1) C.G. S.X.
0.01 1e+0 34 Contig10819_at Contig10819 - - 4e+0 At3g20440 alpha-amylase/ catalytic/ cation binding C.G. S.X.
0.01 1e+0 34 Contig9094_at Contig9094 - - 2e-3 At2g28790 osmotin-like protein, putative C.G. S.X.
0.02 1e+0 34 Contig2778_at Contig2778 - - 4e-7 At5g64350 FKBP12 (FK506-BINDING PROTEIN) C.G. S.X.
0.01 4e+0 32 Contig4569_at Contig4569 - - 5e-6 At5g04590 SIR C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e+0 34 Arabidopsis thaliana At2g14890 815978 AGP9 (ARABINOGALACTAN PROTEIN 9) putative proline-rich protein (At2g14890) mRNA, complete - - - C.G. S.X.
0.02 2e-1 38 Glycine max Gma.5017.1.S1_at BI472180 - - 4e-42 At4g39170 SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative C.G. S.X.
0.02 1e+0 36 Oryza sativa Os02g0292700 9630.m01814 - - 4e+0 At4g36240 zinc finger (GATA type) family protein C.G. S.X.
0.03 8e-1 36 Populus trichocarpa PtpAffx.223188.1.S1_at pmrna41062 hypothetical protein - 8e+0 At1g34047 - C.G. S.X.
0.10 3e-12 73 Triticum aestivum Ta.9678.1.S1_at BJ226097 - - 4e+0 At5g40230 nodulin-related C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1621583_at CF404733 hypothetical protein LOC100266937 - 3e-12 At1g05850 POM1 (POM-POM1) C.G. S.X.
0.07 7e-11 67 Zea mays Zm.9189.1.A1_at BM267192 - - 9e-2 At1g44920 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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