Gene omics information

Query gene ID	Contig21277_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	92.5	Contig21277_at	Contig21277	-	-	8e-12	At1g26850	dehydration-responsive family protein	S.X.	H.G.	Please select
0.61	78.7	Contig8333_at	Contig8333	-	-	4e-2	At3g56510	TBP-binding protein, putative	S.X.	H.G.	Please select
0.60	77.3	Contig8242_at	Contig8242	-	-	1e+0	At5g11620	SWIM zinc finger family protein / mitogen-activated protein kinase kinase kinase (MAPKKK)-related	S.X.	H.G.	Please select
0.50	66.9	Contig5897_at	Contig5897	-	-	6e-1	At5g27810	sequence-specific DNA binding / transcription factor	S.X.	H.G.	Please select
0.50	66.9	Contig15453_s_at	Contig15453	-	-	7e+0	Atcg00050	-	S.X.	H.G.	Please select
0.47	62.2	Contig6767_s_at	Contig6767	-	-	2e-11	At1g13640	phosphatidylinositol 3- and 4-kinase family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.4	99.0	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.6	98.6	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.1	98.4	GSM372971	genotype: Mla6 - pathogen isolates: K1 - time: 32 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.6	98.2	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.4	98.1	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
6.3	98.1	GSM372959	genotype: Mla6 - pathogen isolates: K1 - time: 8 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.7	97.7	GSM146379	Maythorpe shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.6	97.7	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.3	97.4	GSM146374	Golden Promise shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.1	97.3	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	7e-17	87	Contig10400_s_at	Contig10400	-	-	4e-5	At1g26850	dehydration-responsive family protein	C.G.	S.X.	Please select
0.11	7e-17	87	Contig10399_at	Contig10399	-	-	3e-5	At1g26850	dehydration-responsive family protein	C.G.	S.X.	Please select
0.11	4e-9	61	Contig13791_at	Contig13791	-	-	3e-11	At1g26850	dehydration-responsive family protein	C.G.	S.X.	Please select
0.03	2e-1	36	Contig2488_s_at	Contig2488	-	-	3e-1	At3g29034	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	HV_CEb0004J18r2_at	HV_CEb0004J18r2	-	-	5e+0	At5g02730	allergen V5/Tpx-1-related family protein	C.G.	S.X.	Please select
0.02	2e-1	36	Contig2489_at	Contig2489	-	-	1e-2	At1g78340	ATGSTU22 (GLUTATHIONE S-TRANSFERASE TAU 22)	C.G.	S.X.	Please select
0.01	3e+0	32	Contig18368_at	Contig18368	-	-	3e+0	At3g06870	proline-rich family protein	C.G.	S.X.	Please select
0.01	3e+0	32	Contig7681_s_at	Contig7681	-	-	4e-18	At5g64030	dehydration-responsive protein-related	C.G.	S.X.	Please select
0.01	3e+0	32	Contig16566_at	Contig16566	-	-	3e-9	At3g56080	dehydration-responsive protein-related	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	8e-12	71	Arabidopsis thaliana	At1g26850	839229	dehydration-responsive family protein	F:unknown;P:unknown;C:Golgi apparatus, membrane;PBO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.13	7e-13	75	Glycine max	GmaAffx.9474.1.S1_at	AW570282	-	-	1e-10	At1g26850	dehydration-responsive family protein	C.G.	S.X.	Please select
0.31	1e-160	567	Oryza sativa	Os03g0379100	AK119277.1	-	Putative methyltransferase DUF248 family protein	2e-15	At1g26850	dehydration-responsive family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.22	8e-19	95	Populus trichocarpa	Ptp.3119.1.A1_at	CK091927	-	-	4e-11	At4g18030	dehydration-responsive family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.90	0	1289	Triticum aestivum	Ta.6370.1.S1_at	BJ308985	-	-	6e-10	At1g26850	dehydration-responsive family protein	C.G.	S.X.	Please select
0.13	2e-13	75	Vitis vinifera	1616682_at	CF512457	hypothetical protein LOC100266059	-	9e-37	At4g18030	dehydration-responsive family protein	C.G.	S.X.	Please select
0.02	1e+1	30	Zea mays	ZmAffx.455.1.A1_at	AI677194	hypothetical protein LOC100194007	-	3e+0	At1g44085	glycine-rich protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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