Gene omics information

Query gene ID	Contig21253_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.78	91.2	Contig21253_at	Contig21253	-	-	2e+1	At5g17165	unknown protein	S.X.	H.G.	Please select
0.58	74.9	Contig17228_at	Contig17228	-	-	1e+0	At3g44070	beta-galactosidase	S.X.	H.G.	Please select
0.48	63.2	Contig15350_at	Contig15350	-	-	5e-1	At1g52790	oxidoreductase, 2OG-Fe(II) oxygenase family protein	S.X.	H.G.	Please select
0.47	62.2	Contig9955_at	Contig9955	-	-	3e-1	At2g23310	ATRER1C1	S.X.	H.G.	Please select
0.47	62.2	Contig23208_at	Contig23208	-	-	3e-1	At4g30460	glycine-rich protein	S.X.	H.G.	Please select
0.46	61.0	Contig10941_at	Contig10941	-	-	2e-1	At3g48340	cysteine-type endopeptidase/ cysteine-type peptidase	S.X.	H.G.	Please select
0.46	61.0	Contig8440_at	Contig8440	-	-	5e-1	At1g09155	AtPP2-B15 (Phloem protein 2-B15)	S.X.	H.G.	Please select
0.39	50.5	Contig16883_at	Contig16883	-	-	8e+0	Atmg00630	-	S.X.	H.G.	Please select
0.38	49.5	Contig12580_at	Contig12580	-	-	1e+0	At5g28640	AN3 (ANGUSTIFOLIA 3)	S.X.	H.G.	Please select
0.37	47.9	Contig8360_at	Contig8360	-	-	2e-23	At4g00370	ANTR2	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
80.8	100.0	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
67.8	100.0	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
36.1	99.9	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
31.3	99.9	GSM431573	pathogen isolates: Polymyxa betae - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
24.2	99.8	GSM431571	pathogen isolates: Polymyxa betae - rep1	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
22.3	99.8	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
19.7	99.7	GSM431551	pathogen isolates: Polymyxa graminis - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
18.3	99.7	GSM431548	pathogen isolates: Mock - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
16.7	99.6	GSM431568	pathogen isolates: Mock inoculated control - rep1	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
14.0	99.5	GSM431570	pathogen isolates: Mock inoculated control - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.71	2e-143	508	Contig15712_s_at	Contig15712	-	-	7e-3	At1g22360	AtUGT85A2 (UDP-glucosyl transferase 85A2)	C.G.	S.X.	Please select
0.71	2e-143	508	Contig15712_at	Contig15712	-	-	7e-3	At1g22360	AtUGT85A2 (UDP-glucosyl transferase 85A2)	C.G.	S.X.	Please select
0.58	6e-134	476	Contig14081_at	Contig14081	-	-	1e-1	At1g22340	AtUGT85A7 (UDP-glucosyl transferase 85A7)	C.G.	S.X.	Please select
0.10	6e-26	117	HS16J06u_at	HS16J06u	-	-	2e+1	At5g59950	RNA and export factor-binding protein, putative	C.G.	S.X.	Please select
0.13	3e-12	71	Contig9397_at	Contig9397	-	-	2e-4	At1g22370	AtUGT85A5 (UDP-glucosyl transferase 85A5)	C.G.	S.X.	Please select
0.10	2e-10	65	HV12J05u_at	HV12J05u	-	-	1e+0	At3g52360	unknown protein	C.G.	S.X.	Please select
0.11	2e-10	65	EBro02_SQ001_G03_s_at	EBro02_SQ001_G03	-	-	8e-1	At5g39730	avirulence-responsive protein-related / avirulence induced gene (AIG) protein-related	C.G.	S.X.	Please select
0.11	2e-10	65	EBro02_SQ001_G03_at	EBro02_SQ001_G03	-	-	8e-1	At5g39730	avirulence-responsive protein-related / avirulence induced gene (AIG) protein-related	C.G.	S.X.	Please select
0.12	8e-10	63	Contig14823_at	Contig14823	-	-	8e-1	At1g21350	antioxidant/ oxidoreductase	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+1	30	Arabidopsis thaliana	At5g17165	5008216	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	PsAffx.psML007xO16f_at	PsAffx.psML007xO16f	-	-	2e+1	At5g03110	-	C.G.	S.X.	Please select
0.25	2e-38	161	Oryza sativa	Os.47907.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+0	34	Populus trichocarpa	PtpAffx.110715.1.A1_s_at	CV229269	hypothetical protein	-	2e-2	At1g22370	AtUGT85A5 (UDP-glucosyl transferase 85A5)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.70	5e-170	597	Triticum aestivum	TaAffx.37305.1.A1_at	BJ286678	-	-	1e+0	At3g46640	PCL1 (PHYTOCLOCK 1)	C.G.	S.X.	Please select
0.03	7e+0	30	Vitis vinifera	1611025_at	CF403139	hypothetical protein LOC100243600	-	4e-1	At3g21560	UGT84A2	C.G.	S.X.	Please select
0.36	1e-60	232	Zea mays	Zm.6272.1.A1_at	AY111701.1	-	-	4e-2	At1g22360	AtUGT85A2 (UDP-glucosyl transferase 85A2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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