Gene omics information

Query gene ID	Contig21194_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.75	89.5	Contig21194_s_at	Contig21194	-	-	5e+0	At2g20940	unknown protein	S.X.	H.G.	Please select
0.27	32.1	HA03M05u_s_at	HA03M05u	-	-	2e-7	At3g20390	endoribonuclease L-PSP family protein	S.X.	H.G.	Please select
0.26	30.4	Contig20636_at	Contig20636	-	-	5e-6	At5g05830	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.22	24.2	Contig8592_at	Contig8592	-	-	7e-1	At3g17090	protein phosphatase 2C family protein / PP2C family protein	S.X.	H.G.	Please select
0.20	21.1	Contig12503_at	Contig12503	-	-	7e+0	At5g54490	PBP1 (PINOID-BINDING PROTEIN 1)	S.X.	H.G.	Please select
0.17	16.9	Contig1302_at	Contig1302	-	-	1e-5	At1g20580	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	S.X.	H.G.	Please select
0.15	14.1	Contig14516_at	Contig14516	glutathione synthetase	-	3e-2	At5g27380	GSH2 (GLUTATHIONE SYNTHETASE 2)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
49.9	99.9	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
40.6	99.9	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
31.4	99.9	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
30.1	99.9	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
27.4	99.8	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds
27.2	99.8	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
25.0	99.8	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
22.0	99.8	GSM282035	Malting_day4_Morex_rep1	GSE11200	Expression data from malting barley seeds
19.5	99.7	GSM282025	Control_dryseed_Morex_rep1	GSE11200	Expression data from malting barley seeds
10.9	99.2	GSM282024	Malting_day4_Merit_rep2	GSE11200	Expression data from malting barley seeds

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.97	0	1154	Contig21194_at	Contig21194	-	-	5e+0	At2g20940	unknown protein	C.G.	S.X.	Please select
0.02	4e-2	38	Contig1298_at	Contig1298	-	-	6e-51	At2g36530	LOS2	C.G.	S.X.	Please select
0.02	6e-1	34	Contig16079_at	Contig16079	-	-	1e-4	At2g37640	EXP3	C.G.	S.X.	Please select
0.03	6e-1	34	Contig20671_at	Contig20671	-	-	4e+0	At5g39240	unknown protein	C.G.	S.X.	Please select
0.04	6e-1	34	Contig19256_at	Contig19256	-	-	3e-2	At1g16790	ribosomal protein-related	C.G.	S.X.	Please select
0.01	2e+0	32	Contig5833_s_at	Contig5833	-	-	3e-4	At2g17370	HMG2 (3-HYDROXY-3-METHYLGLUTARYL-COA REDUCTASE 2)	C.G.	S.X.	Please select
0.01	2e+0	32	Contig5833_at	Contig5833	-	-	3e-4	At2g17370	HMG2 (3-HYDROXY-3-METHYLGLUTARYL-COA REDUCTASE 2)	C.G.	S.X.	Please select
0.03	2e+0	32	HVSMEg0018C11r2_at	HVSMEg0018C11r2	-	-	4e+0	At1g18630	GR-RBP6 (glycine-rich RNA-binding protein 6)	C.G.	S.X.	Please select
0.03	2e+0	32	Contig18532_at	Contig18532	-	-	3e+0	At2g44310	calcium-binding EF hand family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e+0	32	Arabidopsis thaliana	At2g20940	816628	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, plastid;MPFO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	34	Glycine max	PsAffx.psHB040xB21f_s_at	PsAffx.psHB040xB21f	-	-	6e-1	At2g20613	unknown protein	C.G.	S.X.	Please select
0.19	5e-32	139	Oryza sativa	Os03g0157700	AK106245.1	-	Protein of unknown function DUF639 family protein	3e-1	At5g23390	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	6e+0	32	Populus trichocarpa	PtpAffx.217856.1.S1_at	pmrna33281	hypothetical protein	-	3e+1	At4g13170	60S ribosomal protein L13A (RPL13aC)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	1e-3	44	Triticum aestivum	TaAffx.86481.1.S1_at	CA607163	-	-	3e+0	At4g32960	unknown protein	C.G.	S.X.	Please select
0.02	5e+0	30	Vitis vinifera	1608763_at	CB973094	hypothetical protein LOC100249909	-	3e-1	At5g41071	unknown protein	C.G.	S.X.	Please select
0.03	8e+0	30	Zea mays	ZmAffx.721.1.A1_at	AI665110	hypothetical protein LOC100274867	-	3e+0	At3g10980	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage