Gene omics information

Query gene ID	Contig21194_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig21194_at	Contig21194	-	-	5e+0	At2g20940	unknown protein	S.X.	H.G.	Please select
0.80	92.5	Contig21235_at	Contig21235	-	-	5e-1	At1g74060	60S ribosomal protein L6 (RPL6B)	S.X.	H.G.	Please select
0.80	92.5	Contig21185_at	Contig21185	-	-	4e-1	At3g24710	-	S.X.	H.G.	Please select
0.53	69.7	Contig9411_at	Contig9411	-	-	8e-12	At3g20060	UBC19 (ubiquitin-conjugating enzyme19)	S.X.	H.G.	Please select
0.48	63.2	Contig6578_at	Contig6578	-	-	1e-27	At1g64650	-	S.X.	H.G.	Please select
0.30	37.0	HVSMEn0025K09r2_at	HVSMEn0025K09r2	-	-	8e-1	At2g21650	MEE3 (MATERNAL EFFECT EMBRYO ARREST 3)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
96.6	100.0	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
55.0	100.0	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
49.3	99.9	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
31.9	99.9	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
23.0	99.8	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
18.9	99.7	GSM282024	Malting_day4_Merit_rep2	GSE11200	Expression data from malting barley seeds
15.6	99.6	GSM282020	Malting_day4_Legacy_rep 3	GSE11200	Expression data from malting barley seeds
13.3	99.4	GSM282022	Malting_day4_Merit_rep4	GSE11200	Expression data from malting barley seeds
12.9	99.4	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
12.5	99.4	GSM282021	Malting_day4_Legacy_rep 2	GSE11200	Expression data from malting barley seeds

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.97	0	1154	Contig21194_s_at	Contig21194	-	-	5e+0	At2g20940	unknown protein	C.G.	S.X.	Please select
0.02	4e-2	38	Contig1298_at	Contig1298	-	-	6e-51	At2g36530	LOS2	C.G.	S.X.	Please select
0.02	6e-1	34	Contig16079_at	Contig16079	-	-	1e-4	At2g37640	EXP3	C.G.	S.X.	Please select
0.03	6e-1	34	Contig20671_at	Contig20671	-	-	4e+0	At5g39240	unknown protein	C.G.	S.X.	Please select
0.04	6e-1	34	Contig19256_at	Contig19256	-	-	3e-2	At1g16790	ribosomal protein-related	C.G.	S.X.	Please select
0.01	2e+0	32	Contig5833_s_at	Contig5833	-	-	3e-4	At2g17370	HMG2 (3-HYDROXY-3-METHYLGLUTARYL-COA REDUCTASE 2)	C.G.	S.X.	Please select
0.01	2e+0	32	Contig5833_at	Contig5833	-	-	3e-4	At2g17370	HMG2 (3-HYDROXY-3-METHYLGLUTARYL-COA REDUCTASE 2)	C.G.	S.X.	Please select
0.03	2e+0	32	HVSMEg0018C11r2_at	HVSMEg0018C11r2	-	-	4e+0	At1g18630	GR-RBP6 (glycine-rich RNA-binding protein 6)	C.G.	S.X.	Please select
0.03	2e+0	32	Contig18532_at	Contig18532	-	-	3e+0	At2g44310	calcium-binding EF hand family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e+0	32	Arabidopsis thaliana	At2g20940	816628	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, plastid;MPFO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	34	Glycine max	PsAffx.psHB040xB21f_s_at	PsAffx.psHB040xB21f	-	-	6e-1	At2g20613	unknown protein	C.G.	S.X.	Please select
0.19	5e-32	139	Oryza sativa	Os03g0157700	AK106245.1	-	Protein of unknown function DUF639 family protein	3e-1	At5g23390	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	6e+0	32	Populus trichocarpa	PtpAffx.217856.1.S1_at	pmrna33281	hypothetical protein	-	3e+1	At4g13170	60S ribosomal protein L13A (RPL13aC)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	1e-3	44	Triticum aestivum	TaAffx.86481.1.S1_at	CA607163	-	-	3e+0	At4g32960	unknown protein	C.G.	S.X.	Please select
0.02	5e+0	30	Vitis vinifera	1608763_at	CB973094	hypothetical protein LOC100249909	-	3e-1	At5g41071	unknown protein	C.G.	S.X.	Please select
0.03	8e+0	30	Zea mays	ZmAffx.721.1.A1_at	AI665110	hypothetical protein LOC100274867	-	3e+0	At3g10980	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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