Gene omics information

Query gene ID	Contig21103_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	78.7	Contig21103_at	Contig21103	-	-	1e+0	At3g07880	Rho GDP-dissociation inhibitor family protein	S.X.	H.G.	Please select
0.80	92.5	Contig3986_s_at	Contig3986	-	-	6e-2	At4g13450	universal stress protein (USP) family protein	S.X.	H.G.	Please select
0.75	89.5	HVSMEb0001K06r2_at	HVSMEb0001K06r2	-	-	8e-1	At5g58210	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.75	89.5	Contig9009_s_at	Contig9009	-	-	4e-1	At3g10116	unknown protein	S.X.	H.G.	Please select
0.61	78.7	Contig25049_at	Contig25049	-	-	2e+0	At1g20280	homeobox-leucine zipper protein-related	S.X.	H.G.	Please select
0.61	78.7	Contig4118_at	Contig4118	-	-	8e-4	At3g61610	aldose 1-epimerase family protein	S.X.	H.G.	Please select
0.53	69.7	Contig9975_at	Contig9975	-	-	1e+0	At1g27435	unknown protein	S.X.	H.G.	Please select
0.51	67.5	Contig8340_at	Contig8340	-	-	8e-3	At2g41190	amino acid transporter family protein	S.X.	H.G.	Please select
0.48	63.2	Contig10324_at	Contig10324	-	-	5e-33	At4g21800	QQT2 (quatre-quart2)	S.X.	H.G.	Please select
0.44	58.9	Contig10972_at	Contig10972	-	-	1e-5	At1g32500	ATNAP6 (NON-INTRINSIC ABC PROTEIN 6)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
21.5	99.8	GSM431573	pathogen isolates: Polymyxa betae - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
19.1	99.7	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
17.9	99.7	GSM431568	pathogen isolates: Mock inoculated control - rep1	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
17.6	99.6	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
16.9	99.6	GSM431548	pathogen isolates: Mock - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
14.0	99.5	GSM431570	pathogen isolates: Mock inoculated control - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
13.2	99.4	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
12.2	99.4	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
10.5	99.2	GSM431551	pathogen isolates: Polymyxa graminis - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
10.2	99.1	GSM431571	pathogen isolates: Polymyxa betae - rep1	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.28	2e-13	75	Contig13799_at	Contig13799	-	-	2e-5	At1g77120	ADH1 (ALCOHOL DEHYDROGENASE 1)	C.G.	S.X.	Please select
0.03	4e-2	38	Contig14640_at	Contig14640	-	-	3e-5	At2g46580	pyridoxine 5'-phosphate oxidase-related	C.G.	S.X.	Please select
0.03	2e-1	36	Contig2540_at	Contig2540	-	-	2e-27	At3g11500	small nuclear ribonucleoprotein G, putative / snRNP-G, putative / Sm protein G, putative	C.G.	S.X.	Please select
0.02	7e-1	34	Contig6972_at	Contig6972	-	-	5e-26	At5g62740	band 7 family protein	C.G.	S.X.	Please select
0.02	7e-1	34	Contig10034_at	Contig10034	-	-	2e-4	At1g32780	alcohol dehydrogenase, putative	C.G.	S.X.	Please select
0.02	3e+0	32	Contig816_s_at	Contig816	-	-	6e-4	At1g77120	ADH1 (ALCOHOL DEHYDROGENASE 1)	C.G.	S.X.	Please select
0.02	3e+0	32	Contig26196_at	Contig26196	-	-	4e-1	At1g08570	ACHT4 (ATYPICAL CYS HIS RICH THIOREDOXIN 4)	C.G.	S.X.	Please select
0.02	3e+0	32	Contig903_at	Contig903	-	-	5e-11	At1g77120	ADH1 (ALCOHOL DEHYDROGENASE 1)	C.G.	S.X.	Please select
0.03	3e+0	32	HM07M20r_at	HM07M20r	-	-	1e+1	At5g56050	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At3g07880	819979	Rho GDP-dissociation inhibitor family protein	F:Rho GDP-dissociation inhibitor activity;P:biological_process unknown;C:cytoplasm;MFPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	5e-1	36	Glycine max	Gma.15988.1.S1_at	BE657247	-	-	8e-14	At2g23930	SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G)	C.G.	S.X.	Please select
0.42	4e-113	408	Oryza sativa	Os07g0621800	AK071704.1	-	Zinc-containing alcohol dehydrogenase superfamilyprotein	7e-1	At5g43940	HOT5 (sensitive to hot temperatures 5)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	5e-1	36	Populus trichocarpa	PtpAffx.58733.1.A1_at	CK093090	hypothetical protein	-	1e+0	At4g22110	alcohol dehydrogenase, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.70	0	692	Triticum aestivum	Ta.30600.1.S1_at	BJ291893	-	-	4e+0	At3g57500	unknown protein	C.G.	S.X.	Please select
0.03	1e-1	36	Vitis vinifera	1607214_at	CB347082	hypothetical protein LOC100247783	-	2e-42	At2g23930	SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G)	C.G.	S.X.	Please select
0.09	7e-10	63	Zea mays	Zm.4033.1.A1_at	CF636055	hypothetical protein LOC100273217	-	5e-2	At5g43940	HOT5 (sensitive to hot temperatures 5)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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