Gene omics information

Query gene ID	Contig21078_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig21078_at	Contig21078	-	-	6e-1	At1g77765	unknown protein	S.X.	H.G.	Please select
0.73	88.7	Contig17872_at	Contig17872	-	-	2e+0	At3g24730	catalytic	S.X.	H.G.	Please select
0.67	84.7	Contig4495_x_at	Contig4495	-	-	1e+0	At5g12235	CLE22 (CLAVATA3/ESR-RELATED 22)	S.X.	H.G.	Please select
0.63	80.3	Contig4498_at	Contig4498	-	-	2e-1	At1g28290	AGP31 (arabinogalactan-protein 31)	S.X.	H.G.	Please select
0.61	78.7	Contig4499_s_at	Contig4499	-	-	4e-18	At4g22670	AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1)	S.X.	H.G.	Please select
0.47	62.2	Contig1403_at	Contig1403	-	-	1e-2	At3g26430	GDSL-motif lipase/hydrolase family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
23.2	99.8	GSM160822	38% SWC rep3	GSE6990	Barley drought stress
14.9	99.5	GSM160826	19% SWC rep3	GSE6990	Barley drought stress
12.0	99.3	GSM160819	38% SWC rep1	GSE6990	Barley drought stress
11.6	99.3	GSM419977	Palea_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
11.6	99.3	GSM440965	Control palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
10.4	99.2	GSM419973	Lemma_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
10.4	99.2	GSM440958	Control lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
9.5	99.0	GSM160831	7% SWC rep1	GSE6990	Barley drought stress
8.9	98.9	GSM419975	Palea_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
8.9	98.9	GSM440963	Control palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-2	40	Contig24289_at	Contig24289	-	-	1e+0	At4g29850	unknown protein	C.G.	S.X.	Please select
0.02	3e-1	36	Contig11550_s_at	Contig11550	-	-	2e+0	At2g41100	TCH3 (TOUCH 3)	C.G.	S.X.	Please select
0.02	1e+0	34	Contig18066_at	Contig18066	-	-	7e+0	At5g23920	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	34	Contig23443_at	Contig23443	-	-	6e+0	At5g47610	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	1e+0	34	Contig14442_at	Contig14442	-	-	6e+0	At5g53420	-	C.G.	S.X.	Please select
0.02	1e+0	34	Contig12317_at	Contig12317	-	-	2e-2	At4g30064	LCR61 (Low-molecular-weight cysteine-rich 61)	C.G.	S.X.	Please select
0.01	4e+0	32	Contig17787_at	Contig17787	-	-	6e-1	At3g62620	sucrose-phosphatase-related	C.G.	S.X.	Please select
0.01	4e+0	32	Contig13836_at	Contig13836	-	-	1e-1	At5g45090	AtPP2-A7 (Phloem protein 2-A7)	C.G.	S.X.	Please select
0.01	4e+0	32	Contig12550_at	Contig12550	-	-	4e-2	At5g64620	C/VIF2 (CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	6e-1	36	Arabidopsis thaliana	At1g77765	844113	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	3e+0	34	Glycine max	GmaAffx.16746.2.A1_at	AW279003	-	-	2e-1	At5g48530	unknown protein	C.G.	S.X.	Please select
0.09	2e-2	42	Oryza sativa	Os03g0202500	AK071140.1	-	Cyclin-like F-box domain containing protein	3e+0	At5g57510	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	2e-1	38	Populus trichocarpa	PtpAffx.50125.1.A1_at	CV257973	hypothetical protein	-	2e-17	At3g45880	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.45	2e-112	406	Triticum aestivum	Ta.5409.1.S1_x_at	BJ269503	-	-	4e+0	At5g16486	-	C.G.	S.X.	Please select
0.02	7e-1	34	Vitis vinifera	1620855_at	CB346224	similar to putative mitogen-activated protein kinase kinase	-	7e-8	At4g26070	MEK1 (MAP KINASE/ ERK KINASE 1)	C.G.	S.X.	Please select
0.05	3e-4	46	Zea mays	Zm.12240.1.S1_a_at	BM333683	F-box domain containing protein	-	2e+0	At5g60540	PDX2 (PYRIDOXINE BIOSYNTHESIS 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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