Gene omics information

Query gene ID	Contig21045_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.57	74.9	Contig21045_at	Contig21045	-	-	4e+0	At5g51130	methyltransferase	S.X.	H.G.	Please select
0.80	92.5	Contig12375_at	Contig12375	-	-	1e-4	At3g28940	avirulence-responsive protein, putative / avirulence induced gene (AIG) protein, putative	S.X.	H.G.	Please select
0.74	89.1	Contig6082_at	Contig6082	-	-	2e+0	At3g52760	integral membrane Yip1 family protein	S.X.	H.G.	Please select
0.63	80.3	Contig8695_at	Contig8695	-	-	3e+0	At3g28140	calmodulin-binding protein	S.X.	H.G.	Please select
0.61	78.7	Contig10840_at	Contig10840	-	-	4e-6	At5g50780	ATP binding	S.X.	H.G.	Please select
0.54	70.3	Contig9509_at	Contig9509	-	-	7e-1	At3g23980	unknown protein	S.X.	H.G.	Please select
0.53	69.7	Contig3024_at	Contig3024	-	-	3e+0	At3g13310	DNAJ heat shock N-terminal domain-containing protein	S.X.	H.G.	Please select
0.44	58.9	Contig10037_at	Contig10037	-	-	9e-1	At5g23760	heavy-metal-associated domain-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
20.4	99.7	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
13.4	99.4	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
12.4	99.4	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
10.4	99.2	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
9.2	99.0	GSM238424	Endosperm 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.5	98.8	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.3	98.8	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.3	98.5	GSM238438	Embryo 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.2	98.5	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.0	98.4	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-2	38	Contig15532_at	Contig15532	-	-	3e-17	At5g43760	KCS20 (3-KETOACYL-COA SYNTHASE 20)	C.G.	S.X.	Please select
0.02	2e+0	32	Contig4450_at	Contig4450	-	-	6e-4	At1g03290	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	Contig2551_s_at	Contig2551	-	-	3e-10	At3g52990	pyruvate kinase, putative	C.G.	S.X.	Please select
0.03	2e+0	32	HT06O16u_s_at	HT06O16u	-	-	2e-36	At3g52990	pyruvate kinase, putative	C.G.	S.X.	Please select
0.01	2e+0	32	Contig4447_s_at	Contig4447	-	-	2e-5	At1g03290	unknown protein	C.G.	S.X.	Please select
0.03	8e+0	30	Contig9740_s_at	Contig9740	-	-	9e-1	At5g52190	sugar isomerase (SIS) domain-containing protein	C.G.	S.X.	Please select
0.01	8e+0	30	Contig8331_s_at	Contig8331	-	-	2e-5	At1g55255	-	C.G.	S.X.	Please select
0.02	8e+0	30	Contig13385_s_at	Contig13385	-	-	4e-1	At1g63055	unknown protein	C.G.	S.X.	Please select
0.02	8e+0	30	Contig14209_at	Contig14209	-	-	4e-29	At4g09640	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e+0	32	Arabidopsis thaliana	At5g51130	835187	methyltransferase	F:methyltransferase activity;P:biological_process unknown;C:cellular_component unknown;MBOPF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	GmaAffx.90801.1.S1_at	CF805999	-	-	3e-119	At5g08680	ATP synthase beta chain, mitochondrial, putative	C.G.	S.X.	Please select
0.28	1e-122	440	Oryza sativa	Os01g0858700	AK119765.1	-	Conserved hypothetical protein	1e-6	At2g27590	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.15	7e-15	81	Populus trichocarpa	PtpAffx.204353.1.S1_at	pmrna8560	hypothetical protein	-	7e-25	At2g27590	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.54	2e-125	448	Triticum aestivum	TaAffx.80914.1.S1_at	CA691253	-	-	9e-1	At5g18310	unknown protein	C.G.	S.X.	Please select
0.03	8e-2	36	Vitis vinifera	1609523_at	CF415830	hypothetical protein LOC100250310	-	7e-2	At2g28020	-	C.G.	S.X.	Please select
0.32	1e-90	331	Zea mays	Zm.2904.1.S1_at	AW091182	hypothetical protein LOC100216828	-	2e-5	At2g27590	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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